142.  11/17      J. Egger, C. Nimsky, X. Chen
         “Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application“
         In: SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017. (Link) (pdf)
       
141.  11/17      J. Hu, P. Sun, J. Egger, X. Chen
         “The Simulation of Catheter Interventional Surgery Based on Virtual Reality“
         In: 29th Conference of the international Society for Medical Innovation and Technology (SMIT), Lingotto Congress Center, Torino, Italy, Nov. 2017
       
140.  11/17      Y. Chen, D. Liao, X. Chen, J. Egger
         “A VR-based surgical simulation system using patient- specific physical computing model“
         In: 29th Conference of the international Society for Medical Innovation and Technology (SMIT), Lingotto Congress Center, Torino, Italy, Nov. 2017
       
139.  10/17      A. Hann, L. Bettac, M. M. Haenle, T. Graeter, A. W. Berger, J. Dreyhaupt, D. Schmalstieg, W. G. Zoller, J. Egger
         “Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound“
         In: Sci. Rep. 7, 12779, 2017. (Link) (pdf)
       
138.  09/17      J. Egger, P. Umschaden, X. Chen, P. Fleck, C. Arth, D. Schmalstieg
         “Augmented Reality (AR)-guided intraoperative Navigation“
         In: Partnering Day 2017 - Health Tech Innovations for Successful Business, Krone Center, Graz, Austria, Sep. 2017.
       
137.  08/17      J. Egger, X. Chen, L. Bettac, M. Hänle, T. Gräter, W. Zoller, D. Schmalstieg, A. Hann
         “In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine“
         In: IEEE Biomedical Engineering International Conference (BMEiCON2017), Hokkaido, Japan, Aug. 2017.
       
136.  08/17      J. Egger, J. Wallner, M. Gall, X. Chen, K. Schwenzer-Zimmerer, K. Reinbacher, D. Schmalstieg
         “Computer-aided position planning of miniplates to treat facial bone defects“
         In: PLoS ONE 12(8): e0182839, Aug. 2017. (Link)
       
135.  06/17      X. Chen, L. Xu, X. Li, J. Egger
         “Computer-aided implant design for the restoration of cranial defects“
         In: Sci. Rep. 7, 4199, 2017. (Link) (pdf)
       
134.  06/17      P. Jia, L. Xu, X. Chen, J. Egger
         “An intensity-based rigid registration of 2D C-Arm and 3D CT images for image-assisted navigation system“
         In: Proceedings of the 31st International Congress and Exhibition of Computer Assisted Radiology and Surgery (CARS), Barcelona, Spain, June 2017.
       
133.  04/17      A. Hann, D. Schmalstieg, X. Chen, W. G. Zoller, J. Egger
         “Interactive algorithm for the measurement of pancreatic cancer liver metastases in ultrasound“
         In: 123. Kongress der Deutschen Gesellschaft für Innere Medizin (DGIM), Congress Center Rosengarten, Mannheim, Apr. 2017.
       
132.  04/17      J. Egger, D. Schmalstieg, X. Chen, W. G. Zoller, A. Hann
         “Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images“
         In: Sci. Rep. 7, 892, 2017. (Link) (pdf)
       
131.  04/17      A. Hann, L. Bettac, M. Hänle, T. Gräter, D. Schmalstieg, W. G. Zoller, J. Egger
         “Evaluation of an Interactive Segmentation Algorithm using Ultrasound Images of Pancreatic Cancer Liver Metastases“
         In: J Gastrointestin Liver Dis., Supplement 2, Pages 31-32, Mar. 2017.
       
130.  04/17      A. Hann, D. Schmalstieg, X. Chen, W. G. Zoller, J. Egger
         “Development of a Semiautomatic Segmentation Algorithm for the Measurement of Pancreatic Cancer Liver Metastases in Ultrasound Images“
         In: J Gastrointestin Liver Dis., Supplement 2, Pages 31, Mar. 2017.
       
129.  03/17      J. Egger, M. Gall, J. Wallner, P. Boechat, A. Hann, X. Li, X. Chen, D. Schmalstieg
         “HTC Vive MeVisLab integration via OpenVR for medical applications“
         In: PLoS ONE 12(3): e0173972, Mar. 2017. (Link) (pdf)
       
128.  03/17      J. Egger, M. Gall, A. Tax, M. Ücal, U. Zefferer, X. Li, G. von Campe, U. Schäfer, D. Schmalstieg, X. Chen
         “Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software“
         In: PLoS ONE, 12(3): e0172694, Mar. 2017. (Link) (pdf)
       
127.  03/17      J. Egger, M. Gall, J. Wallner, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg
         “Interaktive Planung von Gesichtsimplantaten“
         In: Bildverarbeitung für die Medizin (BVM), Springer, pp. 134-139, Mar. 2017.
       
126.  02/17      J. Egger, M. Gall, J. Wallner, P. Boechat, A. Hann, X. Li, X. Chen, D. Schmalstieg
         “Integration of the HTC Vive into the Medical Platform MeVisLab“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10138-41, Orlando, FL, USA, Feb. 2017.
       
125.  02/17      M. Gall, K. Reinbacher, J. Wallner, J. Stanzel, X. Chen, K. Schwenzer-Zimmerer, D. Schmalstieg, J. Egger
         “Interactive Planning of Miniplates“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10135-93, Orlando, FL, USA, Feb. 2017.
       
124.  02/17      J. Egger, K. Hochegger, M. Gall, X. Chen, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg, J. Wallner
         “Algorithmic evaluation of lower jawbone segmentations“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10137-11, Orlando, FL, USA, Feb. 2017.
       
123.  01/17      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer“
         In: Sci. Rep. 7, 41549, 2017. (Link)
       
122.  12/16      J. Egger
         “Segmentation of medical data and image-guided intraoperative navigation“ (in German)
         Habilitation in Computer Science (Dr. rer. nat. habil.), Philipps-University of Marburg, Department of Mathematics and Computer Science, 304 pages, 2016. (Link) (pdf)
       
121.  12/16      X. Chen, X. Li, L. Xu, Y. Sun, C. Politis, J. Egger
         “Development of a computer-aided design software for dental splint in orthognathic surgery“
         In: Sci. Rep. 6, 38867, 2016. (Link)
       
120.  11/16      J. Egger, M. Gall, D. Schmalstieg
         “Translational Research (TR) Applications in Biomedical Engineering“
         In: 1st Field of Expertise (FoE) Day Human & Biotechnology, Lecture Hall, Petersgasse 12, TU Graz, Austria, November 2016.
       
119.  10/16      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Improvement in advanced pancreatic cancer survival with novel chemotherapeutic strategies – experience of a community based hospital“
         In: Z Gastroenterol 54(10), 1138-1142, October 2016.
       
118.  10/16      J. Egger, M. Gall, J. Wallner, Z. Deng, P. Boechat de Almeida Germano, A. Hann, X. Li, X. Chen, K. Reinbacher, K. C. Schwenzer-Zimmerer, D. Schmalstieg
         “Virtual Reality in the Medical Domain“
         In: face 2 face - science meets art, Medical University of Graz, Hörsaalzentrum, Austria, September/October 2016.
       
117.  08/16      M. Gall, X. Li, X. Chen, D. Schmalstieg, J. Egger
         “Computer-Aided Planning and Reconstruction of Cranial 3D Implants“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
116.  08/16      M. Gall, J. Wallner, K. Schwenzer-Zimmerer, D. Schmalstieg, K. Reinbacher, J. Egger
         “Computer-aided Reconstruction of Facial Defects“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
115.  08/16      J. Egger, J. Wallner, K. Hochegger, M. Gall, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg
         “Clinical Evaluation of Mandibular Bone Segmentation“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
114.  06/16      M. Gall, X. Li, X. Chen, D. Schmalstieg, J. Egger
         “Computer-Aided Planning of Cranial 3D Implants“
         In: Int J CARS 11 (Suppl 1):S241, Heidelberg, Germany, June 2016.
       
113.  06/16      X. Li, L. Xu, Y. Zhu, J. Egger, X. Chen
         “A semi-automatic implant design method for cranial defect restoration“
         In: Int J CARS 11 (Suppl 1):S241-S243, Heidelberg, Germany, June 2016.
       
112.  06/16      T. Lüddemann, J. Egger
         “Iterative-cuts: longitudinal and scale-invariant segmentation via user-defined templates for rectosigmoid colon in gynecological brachytherapy“
         In: J. Med. Imag. 3(2), 024004 (2016), doi: 10.1117/1.JMI.3.2.024004, June 2016.
       
111.  03/16      T. Lüddemann, J. Egger
         “Interactive and scale invariant segmentation of the rectum/sigmoid via user-defined templates“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9784-113, San Diego, USA, Mar. 2016. (pdf)
       
110.  03/16      J. Egger, C. Nimsky
         “Cellular automata segmentation of the boundary between the compacta of vertebral bodies and surrounding structures“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9787-52, San Diego, USA, Mar. 2016. (pdf)
       
109.  02/16      J. Egger, P. Voglreiter, M. Dokter, M. Hofmann, X. Chen, W. G. Zoller, D. Schmalstieg, A. Hann
         “US-Cut: interactive algorithm for rapid detection and segmentation of liver tumors in ultrasound acquisitions“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9790-47, San Diego, USA, Feb. 2016. (pdf)
       
108.  02/16      X. Chen, L. Xu, Y. Yang, J. Egger
         “A semi-automatic computer-aided method for surgical template design“
         In: Sci. Rep. 6, 20280, 2016. (Link)
       
107.  01/16      K. E. Reinbacher, J. Wallner, J. Egger, P. Voglreiter, M. Pau, T. Zrnc, M. Feichtinger, K. Schwenzer-Zimmerer
         “AR (augmented reality)-Paradigmenwechsel im Therapiedesign“
         In: 20. Jahreskongress der Österreichischen Gesellschaft für Mund-, Kiefer- und Gesichtschirurgie (ÖGMKG), Kur- und Kongresszentrum, Bad Hofgastein, Salzburg, Jänner 2016.
       
106.  01/16      J. Wallner, K. Reinbacher, J. Egger, M. Pau, W. Zemann, T. Zrnc, D. Schmalstieg, K. Schwenzer-Zimmerer
         “Image-guided real-time-segmentation of the mandibular bone: Can a simple Segmentation approach provide a satisfying result for a practicable use?“
         In: 20. Jahreskongress der Österreichischen Gesellschaft für Mund-, Kiefer- und Gesichtschirurgie (ÖGMKG), Kur- und Kongresszentrum, Bad Hofgastein, Salzburg, Jänner 2016.
       
105.  12/15      J. Egger, P. Voglreiter, M. Dokter, M. Hofmann, H. F. Busse, D. Seider, P. Brandmaier, R. Rautio, G. Zettel, B. Schmerböck, M. van Amerongen, S. Jenniskens, M. Kolesnik, B. Kainz, R. B. Sequeiros, H. Portugaller, P. Stiegler, J. Futterer, D. Schmalstieg, M. Moche
         “In-depth Multicenter Workflow Analysis of Liver Tumor Ablations for the Development of a Novel Computer-aided Software Tool“
         In: 101th Annual Meeting of The Radiological Society of North America (RSNA), December 2015.
       
104.  10/15      J. Egger, H. Busse, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, P. Voglreiter, M. Dokter, M. Hofmann, B. Kainz, A. Hann, X. Chen, T. Alhonnoro, M. Pollari, D. Schmalstieg, M. Moche
         “Interactive Volumetry of Liver Ablation Zones“
         In: Sci. Rep. 5, 15373, 2015. (Link)
       
103.  10/15      P. Voglreiter, J. Wallner, K. Reinbacher, K. C. Schwenzer-Zimmerer, D. Schmalstieg, J. Egger
         “Global Illumination Rendering for High-Quality Volume Visualization in the Medical Domain“
         In: face 2 face - science meets art, Medical University of Graz, Hörsaalzentrum, Austria, October 2015.
       
102.  08/15      J. Egger, H. Busse, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, P. Voglreiter, M. Dokter, M. Hofmann, B. Kainz, X. Chen, A. Hann, P. Boechat, W. Yu, B. Freisleben, T. Alhonnoro, M. Pollari, M. Moche, D. Schmalstieg
         “RFA-Cut: Semi-automatic Segmentation of Radiofrequency Ablation Zones with and without Needles via Optimal s-t-Cuts“
         In: 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Milan, Italy, IEEE Press, pp. 2423-2429, Aug. 2015. 
       
101.  04/15      B. Kainz, C. Malamateniou, G. Ferrazzi, M. Murgasova, J. Egger, K. Keraudren, M. Rutherford, J. V. Hajnal, D. Rueckert
         “Adaptive Scan Strategies for fetal MRI Imaging using Slice to Volume Techniques“
         In: Proceedings of The IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, IEEE Press, Brooklyn, NY, United States, April 2015. 
       
100.  04/15      X. Chen, L. Xu, Y. Wang, H. Wang, F. Wang, X. Zeng, Q. Wang, J. Egger
         “Development of a Surgical Navigation System based on Augmented Reality using an Optical see-through Head-mounted Display“
         In: Journal of Biomedical Informatics (JBI), Elsevier, April 2015. 
       
99.  03/15      J. Egger, H. Busse, M. Moche, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, N. Garnov, J. Fuchs, P. Voigt, F. Dazinger, P. Voglreiter, M. Dokter, M. Hofmann, A. Hann, B. Freisleben, T. Kahn, D. Schmalstieg
         “[Semi-automatic Segmentation of Ablation zones in post-interventional CT Data]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, Lübeck, Germany, pp. 281-286, March 2015. (pdf)
       
98.  03/15      T. Lüddemann, J. Egger
         “[Interactive and Scale Invariant Segmentation of the Rectum/Sigmoid in intraoperative MRI Acquisitions for the gynecological brachytherapy]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, Lübeck, Germany, March 2015. (pdf)
       
97.  12/14      H. F. Busse, M. Moche, P. Brandmaier, M. Gawlitza, S. Strocka, T. K. Kahn, D. Schmalstieg, J. Egger
         “Novel Semiautomatic Real-time CT Segmentation Tool and Preliminary Clinical Evaluation on Thermally Induced Lesions in the Liver“
         In: 100th Annual Meeting of The Radiological Society of North America (RSNA), PHS 171, December 2014. (Link) (pdf)
       
96.  06/14      J. Egger
         “Refinement-Cut: User-Guided Segmentation Algorithm for Translational Science“
         In: Sci. Rep. 4, 5164, June 2014. (Link)
       
95.  04/14      R. Schwarzenberg, B. Freisleben, C. Nimsky, J. Egger
         “Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences“
         In: PLoS One, April 2014. (Link)
       
94.  03/14      X. Chen, J. Egger
         “Development of an Open Source Software Module for Enhanced Visualization during MR-Guided Interstitial Gynecologic Brachytherapy“
         In: SpringerPlus, 3:167, March 2014. (Link) (pdf)
       
93.  03/14      J. Egger
         “[Semi-automatic Real-time Contouring with a Template-based and Scale-invariant Approach]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, pp. 366-371, Aachen, Germany, March 2014. (pdf)
       
92.  03/14      D. Zukic, A. Vlasak, J. Egger, D. Horinek, C. Nimsky, A. Kolb
         “Robust Detection and Segmentation for Diagnosis of Vertebral Diseases using Routine MR Images“
         In: Computer Graphics Forum, Article first published online: 4 March 2014.
       
91.  02/14      J. Egger, T. Lüddemann, R. Schwarzenberg, B. Freisleben, C. Nimsky
         “Interactive-Cut: Real-Time Feedback Segmentation for Translational Research“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, Available online 11 February 2014.
       
90.  01/14      T. Kapur, J. Egger, J. Jayender, M. Toews, W. M. Wells
         “Registration and Segmentation for Image Guided Therapy. Book chapter, Intraoperative Imaging and Image-Guided Therapy“
         In: Intraoperative Imaging and Image-Guided Therapy, Ferenc A. Jolesz (Ed.), Springer, pp. 79-91, ISBN: 978-1-4614-7656-6 (Print) 978-1-4614-7657-3 (Online), January 2014.
       
89.  10/13      J. Egger
         “PCG-Cut: Graph Driven Segmentation of the Prostate Central Gland“
         In: PLoS One. 2013; 8(10):e76645. Epub 2013 Oct 11. (Link)
       
88.  09/13      J. Egger, C. Kappus, B. Carl, C. Nimsky
         “GrowCut-Based Vertebral Body Segmentation with 3D Slicer“
         In: Jahrestagung der Sektion Wirbelsäule der Deutschen Gesellschaft für Neurochirurgie (DGNC), Frankfurt am Main, Germany, Poster 24, September 2013
       
87.  08/13      J. Egger
         “Image-guided therapy system for interstitial gynecologic brachytherapy in a multimodality operating suite“
         In: SpringerPlus, 2:395, 2013. (Link)
       
86.  07/13      D. Röttger, J. Egger
         “GPU-Based Isosurface Calculation for Real-time Ablation Zone Navigation“
         In: Research Disclosure, ID 591066, Published in the Research Disclosure Journal 7/13, Published digitally 20 June, 2013
       
85.  06/13      T. Lüddemann, J. Egger
         “Rectum Segmentation in MR-guided Gynecologic Brachytherapy Data“
         In: Proceedings of The British Gynaecological Cancer Society Annual Scientific Meeting in conjunction with the Irish Gynaecological Cancer Society, The Waterfront, Belfast, Northern Ireland, Abstract topic: Cervix, PO97, pp. 162-163, June 2013. (pdf)
       
84.  03/13      G. Pernelle, J. Egger, C. Vale, X. Chen, F. Irlinger, T. Lueth, W. Wells, R. Kikinis, A. Viswanathan, T. Kapur
         “Robust Applicator Registration for Interstitial Gynecologic Brachytherapy“
         In: Brachytherapy, Volume 12, Supplement 1, Page S53, March 2013. (Link)
       
83.  03/13      J. Egger, T. Kapur, B. Freisleben, C. Nimsky
         “Interactive Real-Time Segmentation for Vertebral Bodies and Intervertebral Discs in Sagittal Planes“
         In: 6th NCIGT and NIH Image Guided Therapy Workshop, page 56, Doubletree by Hilton Washington DC in Crystal City, VA, March 2013
       
82.  03/13      J. Egger
         “Intraoperative Visualization of Multimodal Data in Neurosurgery“ (in German)
         In: Annual report 2012/2013, GFFT, p. 35, Saarbrücken, Mar. 2013.
       
81.  03/13      J. Egger, T. Kapur, A. Fedorov, S. Pieper, J. V. Miller, H. Veeraraghavan, B. Freisleben, A. J. Golby, C. Nimsky, R. Kikinis
         “GBM Volumetry using the 3D Slicer Medical Image Computing Platform“
         In: Sci Rep., Nature Publishing Group (NPG), 3:1364, 2013. (Link)
       
80.  03/13      R. Schwarzenberg, B. Freisleben, R. Kikinis, C. Nimsky, J. Egger
         “[A Cube-Based Approach to Segment Vertebrae in MRI-Acquisitions]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, pp. 69-74, Heidelberg, Germany, Mar. 2013.
       
79.  01/13      J. Egger, T. Kapur
         “Interactive Technique for Image Segmentation”
         Research Disclosure, ID 585025, Published in the Research Disclosure Journal 1/13, Published digitally 13 December, 2012.
       
78.  01/13      D. Kuhnt, M. H. A. Bauer, J. Egger, D. Merhof, M. Richter, T. Kapur, J. Sommer, C. Nimsky
         “Fiber tractography based on diffusion tensor imaging (DTI) compared with High Angular Resolution Diffusion Imaging (HARDI) with compressed sensing (CS) – initial experience and clinical impact“
         In: Neurosurgery, accepted, 2013.
       
77.  12/12      J. Egger, D. Zukic, B. Freisleben, A. Kolb, C. Nimsky
         “Segmentation of pituitary adenoma: A graph-based method vs. a balloon inflation method“
         In: Computer Methods and Programs in Biomedicine, Elsevier, 2012
       
76.  12/12      J. Egger, T. Kapur, C. Nimsky, R. Kikinis
         “Pituitary Adenoma Volumetry with 3D Slicer“
         In: PLoS ONE, 2012. (Link)
       
75.  11/12      D. Zukic, A. Vlasak, T. Dukatz, J. Egger, D. Horinek, C. Nimsky, A. Kolb
         “Segmentation of Vertebral Bodies in MR Images“
         In: Vision, Modeling, and Visualization (VMV), The Eurographics Association, pp. 135-142, Nov. 2012.
       
74.  09/12      X. Chen, J. Egger, A. Viswanathan, N. Agrawal, W. Wells, R. Kikinis, C. Tempany, F. Jolesz, T. Kapur
         “Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO“
         In: 9th Interventional MRI Symposium, Boston, Sep. 2012.
       
73.  09/12      J. Egger, T. Kapur, P. Bruners, T. Penzkofer
         “A Software Prototype for Real-time Ablation Zone Planning Using Distance Transformation Calculated Isosurfaces“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
72.  09/12      Y. Gao, N. Farhat, N. Agrawal, G. Pernelle, X. Chen, J. Egger, S. Blevins, S. Bouix, A. Tannenbaum, W. Wells, R. Kikinis, E. Schmidt, A. Viswanathan, T. Kapur
         “Needle Labeling for Interstitial Gynecological Brachytherapy“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
71.  09/12      J. Egger, N. Agrawal, T. Blevins, N. Farhat, G. Pernelle, X. Chen, Y. Gao, W. Wells, T. Penzkofer, T. Kapur, A. Viswanathan
         “Segmentation of Pelvic Structures for Gynecologic Brachytherapy“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
70.  09/12      R. Schwarzenberg, T. Kapur, W. Wells, C. Nimsky, B. Freisleben, J. Egger
         “Graph-Based Vertebra Segmentation Using a Cubic Template“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
69.  09/12      J. Egger, T. Penzkofer, T. Kapur, C. Tempany
         “Prostate Central Gland Segmentation Using a Spherical Template Driven Graph Approach“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
68.  09/12      J. Egger, T. Kapur, A. Fedorov, S. Pieper, J. V. Miller, H. Veeraraghavan, B. Freisleben, A. J. Golby, C. Nimsky, R. Kikinis
         “Capability of the Medical Image Computing Platform 3D Slicer for Glioblastoma Multiforme Segmentation in Magnetic Resonance Imaging (MRI) Data“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
67.  09/12      J. Egger, T. Kapur, C. Nimsky, R. Kikinis
         “Pituitary Adenoma Segmentation Using the Medical Image Computing Platform 3D Slicer“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
66.  08/12      T. Kapur, J. Egger, A. Damato, E.J. Schmidt, A.N. Viswanathan
         “3-T MR-guided brachytherapy for gynecologic malignancies“
         In: Magnetic Resonance Imaging, Elsevier, 12 pages, 2012.
       
65.  06/12      J. Egger
         “Intraoperative Visualization of Multimodal Data in Neurosurgery“ (in German)
         Dissertation in Human Biology (Dr. rer. physiol.), Philipps-University of Marburg, Department of Medicine, 223 pages, 2012. 
       
64.  06/12      C. Kappus, J. Egger, B. Carl, M.H.A. Bauer, C. Nimsky
         “Investigation of an image-based tool for planning safe trajectories in deep-brain-stimulation“
         In: 63. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), Leipzig, Jun. 2012.
       
63.  05/12      J. Egger, B. Freisleben, C. Nimsky, T. Kapur
         “Template-Cut: A Pattern-Based Segmentation Paradigm“
         In: Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012. (Link)
       
62.  05/12      J. Egger, T. Kapur, A.N. Viswanathan
         “Medical System for Gynecologic Radiation Therapy”
         Research Disclosure, ID 577033, Published in the Research Disclosure Journal 5/12, Published digitally 16 April, 2012.
       
61.  05/12      J. Egger, X. Chen, T. Kapur, A. Viswanathan
         “A novel computer program to support MR-guided gynecologic brachytherapy“
         In: World Congress of Brachytherapy, Barcelona, Spain, May 2012.
       
60.  03/12      J. Egger, T. Dukatz, B. Freisleben, Ch. Nimsky
         “Ein semiautomatischer Ansatz zur Flächenbestimmung von Wirbeln in MRT-Aufnahmen“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, Berlin, Germany, Mar. 2012, accepted.
       
59.  02/12      J. Egger, J. Tokuda, L. Chauvin, B. Freisleben, C. Nimsky, T. Kapur, W. Wells III
         “Integration of the OpenIGTLink Network Protocol for Image-Guided Therapy with the Medical Platform MeVisLab“
         In: International Journal of Medical Robotics and Computer Assisted Surgery, Wiley-Blackwell, 2012.
       
58.  02/12      J. Egger, T. Kapur, T. Dukatz, M. Kolodziej, D. Zukic, B. Freisleben, C. Nimsky
         “Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape“
         In: PLoS ONE, 2012. (Link)
       
57.  01/12      J. Egger, S. Grosskopf, C. Nimsky, T. Kapur, B. Freisleben
         “Modeling and Visualization Techniques for Virtual Stenting of Aneurysms and Stenoses“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, 2012.
       
56.  10/11      J. Egger, A. Viswanathan, T. Kapur
         “Bladder Segmentation for Interstitial Gynecologic Brachytherapy with the Nugget-Cut Approach“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
55.  10/11      R. Tibrewal, A. Viswanathan, K. Townamchai, J. Fairhurst, M. Baust, J. Egger, A. Damato, S.-E. Song, S. Pieper, C. Tempany, W. M. Wells, T. Kapur
         “Concept Development and Feasibility Study of Image-based Needle Guidance for MR-Guided Interstitial Gynecologic Brachytherapy in AMIGO“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
54.  10/11      J. Egger, B. Freisleben, R. Tibrewal, Ch. Nimsky, T. Kapur
         “A Method for Solving the Correspondence Problem for an n-Camera Navigation System for Image Guided Therapy“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
53.  08/11      J. Egger, R. Colen, B. Freisleben, Ch. Nimsky
         “Manual Refinement System for Graph-Based Segmentation Results in the Medical Domain“
         In: Journal of Medical Systems, Springer, Aug. 2011.
       
52.  03/11      J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky
         “A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data“
         In: Journal of Medical Systems, Springer, Mar. 2011.
       
51.  03/11      J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky
         “Ein effizienter geometrischer Ansatz zur Unterstützung der Trajektoriebestimmung bei der Tiefenhirnstimulation“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, Lübeck, Germany, Mar. 2011.
       
50.  02/11      R. D. Renapurkar, R. M. Setser, T. P. O’Donnell, J. Egger, M. L. Lieber, M. Y. Desai, A. E. Stillman, P. Schoenhagen, S. D. Flamm
         “Aortic volume as an indicator of disease progression in patients with untreated infrarenal abdominal aneurysm“
         In: European Journal of Radiology, Feb. 2011.
       
49.  02/11      Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “Preoperative Volume Determination for Pituitary Adenoma“
         In: Proceedings of SPIE Medical Imaging Conference, Orlando, Florida, USA, Feb. 2011.
       
48.  12/10      J. Egger, D. Kuhnt, C. Kappus, A. Pagenstecher, Ch. Nimsky
         “Untersuchung des Stoffwechsels im Randbereich hirneigener Tumore mit Hilfe der MRS“
         Genehmigter Ethikantrag, Philipps-Universität Marburg, Fachbereich Medizin, Seiten 1–25, Dez. 2010.
       
47.  11/10      M.H.A. Bauer, S. Barbieri, J. Egger, D. Kuhnt, J. Klein, H.K. Hahn, B. Freisleben, Ch. Nimsky
         “Segmentierung von Faserbahnsystemen mit einem strahlenbasierten Ansatz und Glättung der FA- und Winkel-Karten“
         In: Proceedings of 9. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), MEDICA, Düsseldorf, Germany, Nov. 2010.
       
46.  11/10      J. Egger, Dz. Zukic, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “A Comparison of Two Human Brain Tumor Segmentation Methods for MRI Data“
         In: Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
       
45.  11/10      Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “Glioblastoma Multiforme Segmentation in MRI Data with a Balloon Inflation Approach“
         In: Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
       
44.  10/10      J. Egger, S.K. Zhou, S. Grosskopf, D. Liu, C. Hopfgartner, D. Bernhardt, C. Biermann, Ch. Nimsky, B. Freisleben
         “Body Landmark Detection for a Fully Automatic AAA Stent Graft Planning Software System“
         In: 23rd IEEE International Symposium on Computer-Based Medical Systems, IEEE Press, ACM, Perth, Australia, Oct. 2010.
       
43.  10/10      J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky
         “Evaluation of a Novel Approach for Automatic Volume Determination of Glioblastomas Based on Several Manual Expert Segmentations“
         In: Proceedings of 44. Jahrestagung der DGBMT, Rostock, Germany, Oct. 2010.
       
42.  10/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, J. Klein, H. K. Hahn, B. Freisleben, Ch. Nimsky
         “A Semi-Automatic Graph-Based Approach for Determining the Boundary of Eloquent Fiber Bundles in the Human Brain“
         In: Proceedings of 44. Jahrestagung der DGBMT, Rostock, Germany, Oct. 2010.
       
41.  09/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Freisleben, Ch. Nimsky
         “Min-Cut-Segmentation of WHO Grade IV Gliomas Evaluated against Manual Segmentation“
         In: XIX Congress of the European Society for Stereotactic and Functional Neurosurgery, Athens, Greece, Sep. 2010.
       
40.  09/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Carl, C. Kappus, B. Freisleben, Ch. Nimsky
         “Nugget-Cut: A Segmentation Scheme for Spherically- and Elliptically-Shaped 3D Objects“
         In: 32nd Annual Symposium of the German Association for Pattern Recognition (DAGM), LNCS 6376, pp. 383–392, Springer Press, Darmstadt, Germany, Sep. 2010.
       
39.  09/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, B. Freisleben, Ch. Nimsky
         “Evaluation of Several Cost Functions for Min-Cut-Segmentation of Tubular Fiber Bundles in the Human Brain“
         In: 61. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), Mannheim, Sep. 2010.
       
38.  08/10      J. Klein, S. Barbieri, H. Stuke, M. H. A. Bauer, J. Egger, Ch. Nimsky, H. K. Hahn
         “On the Reliability of Diffusion Neuroimaging“
         In: Neuroimaging, published by Sciyo, pages 1-24, ISBN 978-953-307-127-5, 2010.
       
37.  08/10      M. H. A. Bauer, J. Egger, T. O’Donnell, B. Freisleben, S. Barbieri, J. Klein, H. K. Hahn, Ch. Nimsky
         “A Fast and Robust Graph-based Approach for Boundary Estimation of Fiber Bundles Relying on Fractional Anisotropy Maps“
         In: 20th International Conference on Pattern Recognition (ICPR), Istanbul, Turkey, IEEE Computer Society, Aug. 2010.
       
36.  07/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Freisleben, Ch. Nimsky
         “Pituitary Adenoma Segmentation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
35.  07/10      J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky
         “A Flexible Semi-Automatic Approach for Glioblastoma multiforme Segmentation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
34.  07/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, J. Klein, H. K. Hahn, B. Freisleben, Ch. Nimsky
         “Ray-Based and Graph-Based Methods for Fiber Bundle Boundary Estimation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
33.  06/10      M. H. A. Bauer, S. Barbieri, J. Klein, J. Egger, D. Kuhnt, B. Freisleben, H. K. Hahn, Ch. Nimsky
         “Boundary Estimation of Fiber Bundles derived from Diffusion Tensor Images“
         In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), Jun. 2010.
       
32.  06/10      J. Egger, M. H. A. Bauer, B. Freisleben, Ch. Nimsky
         “Determination, Calculation and Representation of the Upper and Lower Sealing Zones During Virtual Stenting of Aneurysms“
         In: Proceedings of Computer Assisted Radiology and Surgery (CARS 2010), Geneva, Switzerland, Jun. 2010.
       
31.  06/10      M. H. A. Bauer, S. Barbieri, J. Klein, J. Egger, D. Kuhnt, B. Freisleben, H. K. Hahn, Ch. Nimsky
         “A Ray-based Approach for Boundary Estimation of Fiber Bundles derived from Diffusion Tensor Imaging“
         In: Proceedings of Computer Assisted Radiology and Surgery (CARS 2010), Geneva, Switzerland, Jun. 2010.
       
30.  03/10      J. Egger, S. Großkopf, C. Biermann
         “Vollautomatisches Verfahren zur patientenindividuellen Berechnung und Darstellung der Versiegelungszonen beim virtuellen Stenting von Aneurysmen und Stenosen“
         Technical Disclosure, Siemens AG, IPCOM #000194159D, 2010.
       
29.  03/10      J. Egger
         “Pre- and Postoperative Segmentation and Virtual Stenting of Aneurysms and Stenosis“ (in German)
         In: Annual report 2009/2010, GFFT, pp. 25-26, Frankfurt, Mar. 2010.
       
28.  12/09      J. Egger, S. Großkopf, C. Biermann, D. Bernhardt
         “Vollautomatisches Verfahren zur patientenindividuellen Planung und Simulation von Prothesen fuer die endovaskulaere Behandlung von Gefaesserkrankungen“
         Technical Disclosure, Siemens AG, IPCOM #000189498D, 2009.
       
27.  12/09      J. Egger, B. Freisleben, S. Großkopf, C. Leber
         “Method and simulation device for structurally individualized simulation of the introduction of a wall support element into a section of a tubular structure“
         United States Patent Application: 20090304245
       
26.  11/09      J. Egger, S. Großkopf
         “Verfahren zur medizinischen Bilddarstellung“
         Patent (Veröffentlichungsnr.): DE 102006058908 B4 (DPMA).
       
25.  10/09      J. Egger, C. Biermann, S. Großkopf, C. Hopfgartner, D. Fritz, B. Freisleben
         “Vollautomatische Stent-Planung und Stent-Simulation zur Unterstützung der minimal-invasiven Behandlung von abdominalen Bauchaortenaneurysmen“
         In: 39. Jahrestagung der Gesellschaft für Informatik, Lübeck, Lecture Notes in Informatics (LNI), pp. 1317-1327, Oct. 2009.
       
24.  09/09      J. Egger, B. Freisleben, R. Setser, R. Renapuraar, C. Biermann, T. O’Donnell
         “Aorta Segmentation for Stent Simulation“
         In: 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Cardiovascular Interventional Imaging and Biophysical Modelling Workshop, 10 pages, London, UK, Sep. 2009.
       
23.  08/09      J. Egger, S. Großkopf, T. O’Donnell, B. Freisleben
         “A Software System for Stent Planning, Stent Simulation and Follow-Up Examinations in the Vascular Domain“
         In: 22nd IEEE International Symposium on Computer-Based Medical Systems, Albuquerque, New Mexico, USA, IEEE Press, ACM/SIGAPP, pp. 1-7, Aug. 2009.
       
22.  07/09      J. Egger
         “Prä- und postoperative Segmentierung und virtuelles Stenting von Aneurysmen und Stenosen“
         Dissertation, Philipps-Universität Marburg, 2009.
       
21.  04/09      S. Großkopf, J. Egger, J. Lu
         “Verfahren zur Verarbeitung medizintechnischer Bilddaten“
         Veröffentlichungsnr.: DE 102007045268 A1 (DPMA)
       
20.  02/09      J. Egger, S. Großkopf
         “Berechnungsverfahren zur Detektierung von Kollisionen mittels eines Drahtgittermodells repräsentierter räumlicher Objekte sowie Vorrichtung zur Dimensionierung medizinischer Y-Stents“
         Veröffentlichungsnr.: DE 102007039207 A1 (DPMA)
       
19.  01/09      S. Großkopf, J. Egger
         “Vorrichtung und Verfahren zur automatischen Wegplanung“
         Veröffentlichungsnr.: DE 102007028065 A1 (DPMA)
       
18.  11/08      J. Egger, T. O’Donnell, C. Hopfgartner, B. Freisleben
         “Graph-Based Tracking Method for Aortic Thrombus Segmentation“
         In: Proceedings of 4th European Congress for Medical and Biomedical Engineering, Engineering for Health, Antwerp, Belgium, Springer, pp. 584-587, Nov. 2008.
       
17.  11/08      J. Egger, S. Großkopf, B. Freisleben
         “Virtual Stenting for Carotid Stenosis with Elastic Artery Wall Modeling“
         In: Proceedings of 4th European Congress for Medical and Biomedical Engineering, Engineering for Health, Antwerp, Belgium, Springer, pp. 2499-2502, Nov. 2008.
       
16.  07/08      C. Dold, S. Großkopf, C. Biermann, J. Egger
         “Interaktives System zur Planung einer patienten-individuellen endovaskulaeren Prothese anhand von CT-Bilddaten“
         Technical Disclosure, Siemens AG, IPCOM #000172003D, 2008.
       
15.  04/08      K. Greiner, J. Egger, S. Großkopf, J. N. Kaftan, R. Dörner, B. Freisleben
         “Segmentierung von Aortenaneurysmen in CTA-Bildern mit dem statistischen Verfahren der Active Appearance Models“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Berlin, Germany, Springer-Verlag, pp. 51-55, Apr. 2008.
       
14.  04/08      J. Egger, S. Großkopf
         “Verfahren sowie Vorrichtung zur medizinischen Bilddarstellung“
         Veröffentlichungsnr.: DE 102006058908 A1 (DPMA)
       
13.  02/08      J. Lu, J. Egger, A. Wimmer, S. Großkopf, B. Freisleben
         “Detection and Visualization of Endoleaks in CT Data for Monitoring of Thoracic and Abdominal Aortic Aneurysm Stents“
         In: Proceedings of SPIE Medical Imaging Conference, Vol. 6918, pp. 69181F(1-7), San Diego, USA, Feb. 2008.
       
12.   10/07      J. Lu, J. Egger, A. Wimmer, S. Großkopf, B. Freisleben
         “Segmentierung und Visualisierung von Lumen und Thrombus bei thorakalen Aortenaneurysmen“
         In: Proceedings of 6. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), Karlsruhe, Germany, pp. 251-254, Oct. 2007.
       
11.   08/07      J. Egger, Z. Mostarkic, F. Maier, J. N. Kaftan, S. Großkopf, B. Freisleben
         “Fast Self-Collision Detection and Simulation of Bifurcated Stents to Treat Abdominal Aortic Aneurysms (AAA)“
         In: 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Lyon, France, pp. 6231-6234, IEEE Press, Aug. 2007.
       
10.   06/07      J. Egger, Z. Mostarkic, S. Großkopf, B. Freisleben
         “A Fast Vessel Centerline Extraction Algorithm for Catheter Simulation“
         In: 20th IEEE International Symposium on Computer-Based Medical Systems, Maribor, Slovenia, pp. 177-182, IEEE Press, Jun. 2007.
       
9.   04/07      J. Egger, Z. Mostarkic, S. Großkopf, B. Freisleben
         “Preoperative Measurement of Aneurysms and Stenosis and Stent-Simulation for Endovascular Treatment“
         In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington (D.C.), USA, pp. 392-395, IEEE Press, Apr. 2007.
       
8.   03/07      J. Egger, S. Großkopf, B. Freisleben
         “Präoperative Simulation von Rohrprothesen und Y-Stents zur endovaskulären Behandlung von Stenosen und Aneurysmen“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Munich, Germany, pp. 182-186, Springer-Verlag, Mar. 2007.
       
7.   02/07      J. Egger, S. Großkopf, B. Freisleben
         “Simulation of bifurcated stent grafts to treat abdominal aortic aneurysms (AAA)“
         In: Proceedings of SPIE Medical Imaging Conference, Vol. 6509, pp. 65091N(1-6), San Diego, USA, Feb. 2007.
       
6.   10/06      J. Egger, S. Großkopf, B. Freisleben
         “Comparison of two methods for the preoperative visualization of stent grafts in CT-data“
         In: Proceedings of 5. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), Hanover, Germany, pp. 140-141, Oct. 2006.
       
5.   06/06      J. Egger
         “Selektion und Visualisierung von Endoprothesen (Stent Grafts) zur Therapieplanung von Bauchaortenaneurysmen (BAA)“
         Masterthesis, Hochschule Darmstadt, 2006.
       
4.   03/06      D. Richter, J. Egger, G. Straßmann
         “Ein Algorithmus zur Positionsbestimmung von Patienten und Biopsienadeln mit einem Vierkamerasystem“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Hamburg, Germany, pp. 316-320, Springer-Verlag, Mar. 2006.
       
3.   06/04      D. Richter, F. La Torre, J. Egger, G. Straßmann
         “Tetraoptical Camera System for Medical Navigation“
         In: Proceedings of the 17th International EURASIP Conference BIOSIGNAL, Brno, Czech Republic, pp. 270-272, Vutium Press, Jun. 2004. (pdf)
       
2.  03/04      D. Richter, J. Egger
         “Verfahren zur dreidimensionalen Rekonstruktion von räumlichen Punktmodellen aus mehr als zwei fragmentierten Stereobildern für medizinische Anwendungen“
         Veröffentlichungsnr.: DE 102004015498 A1 (DPMA)
       
1.   02/04      J. Egger
         “Fraktionierte 3D-Erkennung von Landmarken mit einem tetraoptischen System “
         Diplomarbeit, Fachhochschule Wiesbaden, 2004.