314.  10/25      F. Barajas Ordonez, K. Xie, A. Ferreira, R. Siepmann, N. Chargi, S. Nebelung, D. Truhn, S. Bergé, P. Bruners, J. Egger, F. Hölzle, M. Wirth, C. Kuhl, B. Puladi
         “Deep Learning-Assisted Skeletal Muscle Radiation Attenuation at C3 Predicts Survival in Head and Neck Cancer”
         Current Oncology, pp. 1-9, 2025. (Link)
       
313.  10/25      K. Xie, et al.
         “Beyond Benchmarks: Towards Robust Artificial Intelligence Bone Segmentation in Socio-Technical Systems”
         Expert Systems with Applications (ESWA), Elsevier, 130031, pp. 1-40, 2025. (Link)
       
312.  10/25      C. Wachinger, G. Luijten, S. Elhabian, K. Gopinath, J. Egger
         “Shape in Medical Imaging“
         International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings, Oct. 2025. (Link)
       
311.  06/25      A. Pepe, R. Schussnig, J. Li, C. Gsaxner, D. Schmalstieg, J. Egger
         “Deep Medial Voxels: Learned Medial Axis Approximations for Anatomical Shape Modeling”
         IEEE TMI, pp. 1-12, 2025. (Link)
       
310.  06/25      I. Jin, J. A. Tangsrivimol, E. Darzi, H. U. Hassan Virk, Z. Wang, J. Egger, S. Hacking, B. S. Glicksberg, M. Strauss, C. Krittanawong
         “DeepSeek vs. ChatGPT: prospects and challenges”
         Front. Artif. Intell., Sec. Machine Learning and Artificial Intelligence, volume 8:1576992, pp. 1-12, 2025. (Link)
       
309.  05/25      J. J. E. Moors, Z. Xu, K. Xie, A. Rashad, O. Vladu, J. Egger, R. Röhrig, F. Hölzle, B. Puladi
         “Full-thickness skin graft versus split-thickness skin graft for fasciocutaneous radial forearm free flap donor site closure: a systematic review and meta-analysis”
         Systematic Reviews, volume 14, Article number 118, pp. 1-18, 2025. (Link)
       
308.  05/25      L. Heine, F. Hörst, J. Fragemann, G. Luijten, J. Egger, F. Bahnsen, M. S. Sarfraz, J. Kleesiek, C. Seibold
         “Spacewalker: Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data”
         Machine Learning Methods in Visualisation for Big Data, The Eurographics Association, pp. 1-5, 2025. (Link)
       
307.  05/25      P. Becker, Y. Li, S. Drobinsky, J. Egger, K. Xie, A. Rashad, K. Radermacher, R. Röhrig, M. de la Fuente, F. Hölzle, B. Puladi
         “Development and validation of collaborative robot-assisted cutting method for iliac crest flap raising: Randomized crossover trial”
         Scientific Reports, volume 15, Article number: 16909, pp. 1-18, 2025. (Link)
       
306.  05/25      Y. M. Mekki, G. Luijten, E. Hagert, S. Belkhair, C. Varghese, J. Qadir, B. Solaiman, M. Bilal, J. Dhanda, J. Egger, J. Deng, V. Khanduja, A. F. Frangi, S. M. Zughaier, M. A. Stotland
         “Digital twins for the era of personalized surgery”
         npj Digital Medicine, volume 8, 283, pp. 1-8, 2025. (Link)
       
305.  05/25      N. Sadok, G. Luijten, F. H. Bahnsen, C. Gsaxner, L. Peters, T. Eichler, T. Rombach, S. Lang, S. Khattab, J. Kleesiek, D. Holle, M. Meyer, J. Egger
         “Performing the HINTS-exam using a mixed-reality head-mounted display in patients with acute vestibular syndrome: a feasibility study”
         Frontiers in Neurology, volume 16, pp. 1-9, 2025. (Link)
       
304.  05/25      A. Brehmer, J. Egger, J. Kleesiek
         “Evaluating Data Augmentation Strategies for Robust Cross-Dataset Generalization in Wound Classification”
         IEEE 22nd International Symposium on Biomedical Imaging (ISBI), IEEE, pp. 1-4, 2025 (Link)
       
303.  05/25      A. R. Memon, H. Shi, T. R. Memon, J. Egger, X. Chen
         “Deep learning-based automatic cranial implant design through direct defect shape prediction and its comparison study”
         Medical & Biological Engineering & Computing, Springer, pp. 1-12, 2025. (Link)
       
302.  05/25      A. Brehmer, C. Seibold, , J. Egger, K. Majjouti, M. Tapp-Herrenbrück, H. Pinnekamp, V. Priester, M. Aleithe, U. Fischer, B. Hosters, J. Kleesiek
         “Fine-Grained Classification of Pressure Ulcers and Incontinence-Associated Dermatitis Using Multimodal Deep Learning: Algorithm Development and Validation Study”
         JMIR AI, 4:e67356, pp. 1-13, 2025. (Link)
       
301.  04/25      Y. Jin, A. Pepe, J. Li, C. Gsaxner, Y. Chen, B. Puladi, F.-h. Zhao, K. Pomykala, J. Kleesiek, A. Frangi, J. Egger
         “Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo”
         ACM Computing Surveys, pp. 1-37, 2025. (Link) (IF 28 (2024))
       
300.  04/25      M. Sallam, I. M. Alasfoor, S. W. Khalid, R. I. Al-Mulla, A. Al-Farajat, M. M. Mijwil, R. Zahrawi, M. Sallam, J. Egger, A. S. Al-Adwan
         “Chinese generative AI models (DeepSeek and Qwen) rival ChatGPT-4 in ophthalmology queries with excellent performance in Arabic and English”
         naara j, 5(1), pp. 1-16, 2025. (Link)
       
299.  03/25      N. Moradi, A. Ferreira, B. Puladi, J. Kleesiek, E. Fatemizadeh, G. Luijten, V. Alves, J. Egger
         “Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-guided Radiotherapy”
         Head and Neck Tumor Segmentation for MR-Guided Applications, Miccai Challenge, Springer, pp. 136-153, 2025 (Link) (Code)
       
298.  02/25      S. Kasper, S. Liszio, K. Schorrmann, M. Gerigk, S. Jovic, O. Basu, K. Kostbade, B. Goraus, A. Elsakka, B. Puladi, J. Kleesiek, M. Schuler, G. Luijten, J. Egger
         “Virtual reality support during systemic cancer therapy to improve anxiety/depressive symptoms and reduce toxicity in patients with gastrointestinal cancers—OncoVR“
         In: ESMO Gastrointestinal Oncology, Elsevier, Volume 7, 100135, Trials in progress, Feb. 2025. (Link)
       
297.  01/25      F. Jonske, M. Kim, E. Nasca, J. Evers, J. Haubold, R. Hosch, F. Nensa, M. Kamp, C. Seibold, J. Egger, J. Kleesiek
         “Why does my medical AI look at pictures of birds? Exploring the efficacy of transfer learning across domain boundaries”
         CMPB, Elsevier, pp. 1-22, 2025. (Link)
       
296.  01/25      J. Keyl, P. Keyl, G. Montavon, R. Hosch, A. Brehmer, L. Mochmann, P. Jurmeister, G. Dernbach, M. Kim, S. Koitka, S. Bauer, N. Bechrakis, M. Forsting, D. Führer-Sakel, M. Glas, V. Grünwald, B. Hadaschik, J. Haubold, K. Herrmann, S. Kasper, R. Kimmig, S. Lang, T. Rassaf, A. Roesch, D. Schadendorf, J. T. Siveke, M. Stuschke, U. Sure, M. Totzeck, A. Welt, M. Wiesweg, H. A. Baba, F. Nensa, J. Egger, K.-R. Müller, M. Schuler, F. Klauschen, J. Kleesiek
         “Decoding pan-cancer treatment outcomes using multimodal real-world data and explainable artificial intelligence“
         Nature Cancer, pp.1-32, 2025. (Link) (Code) (IF 23.5 (2023))
       
295.  01/25      J. A. Tangsrivimol, E. Darzidehkalani, H. U. H. Virk, Z. Wang, J. Egger, M. Wang, S. Hacking, B. S. Glicksberg, M. Strauss, C. Krittanawong
         “Benefits, limits, and risks of ChatGPT in medicine“
         Frontiers in Artificial Intelligence, Frontiers, 8, pp.1-11, 2025. (Link) (IF 3.0 (2023))
       
294.  01/25      N. Solak, A. Ferreira, G. Luijten, B. Puladi, V. Alves, J. Egger
         “GBM-Reservoir: Brain Tumor (Glioblastoma Multiforme) MRI Dataset Collection with Ground Truth Segmentation Masks“
         Data in Brief (DIB), Elsevier, 111287, 2025. (Link) (IF 1.0 (2023))
       
293.  12/24      J. Li, et al.
         “MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision”
         Biomedical Engineering / Biomedizinische Technik, De Gruyter, pp. 1-20, 2024. (Link) (Code) (Code)
       
292.  12/24      A. Ferreira, N. Solak, J. Li, P. Dammann, J. Kleesiek, V. Alves, J. Egger
         “Enhanced Data Augmentation Using Synthetic Data for Brain Tumour Segmentation”
         BraTS 2023, Springer, pp. 79-93, 2024. (Link)
       
291.  12/24      M. Perz, G. Luijten, J. Kleesiek, D. Schmalstieg, J. Egger, C. Gsaxner
         “MultiAR: A Multi-User Augmented Reality Platform for Biomedical Education”
         46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Orlando, USA, 2024. (Link)
       
290.  10/24      Y. Li, S. Drobinsky, P. Becker, K. Xie, M. Lipprandt, C. Andreas Mueller, J. Egger, F. Hölzle, R. Röhrig, K. Radermacher, M. de la Fuente, B. Puladi
         “Accuracy and efficiency of drilling trajectories with augmented reality versus conventional navigation randomized crossover trial”
         npj Digital Medicine, pp. 1-13, 2024. (Link)
       
289.  10/24      S. Gatidis, M. Früh, M. Fabritius, S. Gu, K. Nikolaou, C. La Fougère, J. Ye, J. He, Y. Peng, L. Bi, J. Ma, B. Wang, J. Zhang, Y. Huang, L. Heiliger, Z. Marinov, R. Stiefelhagen, J. Egger, J. Kleesiek, L. Sibille, L. Xiang, S. Bendazolli, M. Astaraki, M. Ingrisch, C. Cyran, T. Küstner
         “Results from the autoPET challenge on fully automated lesion segmentation in oncologic PET/CT imaging”
         Nature Machine Intelligence, pp. 1-21, 2024. (Link)
       
288.  10/24      C. Wachinger, B. Paniagua, S. Elhabian, G. Luijten, J. Egger
         “Shape in Medical Imaging“
         International Workshop, ShapeMI 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6, 2024, Proceedings, Nov. 2024. (Link)
       
287.  09/24      M. Sallam, K. Al-Salahat, H. Eid, J. Egger, B. Puladi
         “Human versus Artificial Intelligence: ChatGPT-4 Outperforming Bing, Bard, ChatGPT-3.5, and Humans in Clinical Chemistry Multiple-Choice Questions”
         Advances in Medical Education and Practice, Dovepress, Volume 15, pp. 857-871, 2024. (Link)
       
286.  09/24      J. Egger, C. Gsaxner, G. Luijten, J. Chen, X. Chen, J. Bian, J. Kleesiek, B. Puladi
         “Is the Apple Vision Pro the Ultimate Display? A First Perspective and Survey on Entering the Wonderland of Precision Medicine”
         JMIR Serious Games, JMIR, 12:e52785, pp. 1-15, 2024. (Link)
       
285.  09/24      A. Brehmer, C. M. Sauer, J. Salazar, K. Hermmann, M. Kim, J. Keyl, F. H. Bahnsen, B. Frank, M. Köhrmann, T. Rassaf, A.-A. Mahabadi, B. Hadaschik, C. Darr, K. Herrmann, S. Tan, J. Buer, T. Brenner, H. C. Reinhardt, F. Nensa, M. Gertz, J. Egger, J. Kleesiek
         “Establishing Medical Intelligence - Leveraging FHIR to Improve Clinical Management: a retrospective cohort and clinical implementation study”
         Journal of Medical Internet Research, JMIR, pp. 1-34, 2024. (Link)
       
284.  08/24      Z. Marinov, P. F. Jäger, J. Egger, J. Kleesiek, R. Stiefelhagen
         “Deep Interactive Segmentation of Medical Images: A Systematic Review and Taxonomy”
         IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), IEEE, pp. 1-20, 2024. (Link)
       
283.  08/24      D. Bošnjak, A. Pepe, R. Schussnig, J. Egger, T.-P. Fries
         “A semi-automatic method for block-structured hexahedral meshing of aortic dissections”
         International Journal for Numerical Methods in Biomedical Engineering, Wiley, pp. 1-15, 2024. (Link)
       
282.  05/24      M. Weber, D. Wild, J. Kleesiek, J. Egger, C. Gsaxner
         “Deep Learning-Based Point Cloud Registration for Augmented Reality-Guided Surgery”
         IEEE International Symposium on Biomedical Imaging (ISBI), Athens, Greece, 2024. (Link)
       
281.  05/24      T. van Meegdenburg, G. Luijten, J. Kleesiek, B. Puladi, A. Ferreira, J. Egger, C. Gsaxner
         “A Baseline Solution for the ISBI 2024 Dreaming Challenge”
         IEEE International Symposium on Biomedical Imaging (ISBI), Athens, Greece, 2024. (Link)
       
280.  05/24      A. Ferreira, G. Luijten, B. Puladi, J. Kleesiek, V. Alves, J. Egger
         “Generalisation of Segmentation Using Generative Adversarial Networks”
         IEEE International Symposium on Biomedical Imaging (ISBI), Athens, Greece, 2024. (Link)
       
279.  05/24      A. Bader, Y. Li, S. Drobinsky, M. de la Fuente, J. Egger, B. Puladi
         “Comparative Analysis of Augmented Reality Devices for Surgical Applications”
         RG OMFS digital, Aachen, Germany, pp. 1-9, 2024. (Paper)
       
278.  08/24      M. Sallam, K. Al-Mahzoum, O. Alshuaib, H. Alhajri, F. Alotaibi, D. Alkhurainej, M. Y. Al-Balwah, M. Barakat, J. Egger
         “Superior Performance of Artificial Intelligence Models in English Compared to Arabic in Infectious Disease Queries”
         BMC Infectious Diseases 24, 799, pp. 1-13, 2024. (Link)
       
277.  06/24      A. M. Bucher, J. Egger, J. Dietz, R. Strecker, T. Hilbert, E. Frodl, M. Wenzel, T. Penzkofer, B. Hamm, F. KH Chun, T. Vogl, J. Kleesiek, M. Beeres
         “Value of MRI - T2 Mapping to Differentiate Clinically Significant Prostate Cancer”
         J Digit Imaging. Inform. med., Springer, pp. 1-12, 2024. (Link)
       
276.  06/24      I. Motmaen, K. Xie, L. Schoenbrunn, J. Berens, K. Grunert, A. M. Plum, J. Raufeisen, A. Ferreira, J. Egger, F. Hoelzle, A. Hermans, D. Truhn, B. Puladi
         “Insights into Predicting Tooth Extraction from Panoramic Dental Images: Artificial Intelligence vs. Dentists”
         Clin Oral Invest 28, 381, pp. 1-12, 2024. (Link)
       
275.  06/24      C. Gsaxner, S. Mori, D. Schmalstieg, J. Egger, G. Paar, W. Bailer, D. Kalkofen
         “DeepDR: Deep Structure-Aware RGB-D Inpainting for Diminished Reality”
         International Conference on 3D Vision (3DV), IEEE, Davos, Switzerland, pp. 751-760, 2024. (Link)
       
274.  06/24      K. Krieger, J. Egger, J. Kleesiek, M. Gunzer, J. Chen
         “Multisensory Extended Reality Applications Offer Benefits for Volumetric Biomedical Image Analysis in Research and Medicine”
         Journal of Imaging Informatics in Medicine, Springer, pp. 1-10, 2024. (Link)
       
273.  05/24      J. Kleesiek, J. Egger
         “Der mobile Patient“
         In Human Hospital, Medizinisch Wissenschaftliche Verlagsgesellschaft, ISBN: 978-3-95466-855-7, June 2024. (Link)
       
272.  05/24      C. Mayer, A. Pepe, S. Hossain, B. Karner, M. Arnreiter, J. Kleesiek, J. Schmid, M. Janisch, H. Deutschmann, M. Fuchsjäger, D. Zimpfer, J. Egger, H. Mächler
         “Type B Aortic Dissection CTA Collection with True and False Lumen Expert Annotations for the Development of AI-based Algorithms”
         Sci. Data 11, Article number: 596, Springer, pp. 1-09, 2024. (Link)
       
271.  05/24      J. Li, D. G. Ellis, A. Pepe, C. Gsaxner, M. R. Aizenberg, J. Kleesiek, J. Egger
         “Back to the Roots: Reconstructing Large and Complex Cranial Defects using an Image-based Statistical Shape Model”
         Journal of Medical Systems, Springer, pp. 1-10, 2024. (Link)
       
270.  05/24      J. Raufeisen, K. Xie, F. Hörst, T. Braunschweig, J. Li, J. Kleesiek, R. Röhrig, J. Egger, B. Leibe, F. Hölzle, A. Hermans, B. Puladi
         “Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images”
         Computer Methods and Programs in Biomedicine, May 2024. (Link)
       
269.  05/24      W. Zhu, Y. Jin, G. Ma, G. Chen, J. Egger, S. Zhang, D. N. Metaxas
         “Classification of lung cancer subtypes on CT images with synthetic pathological priors”
         Medical Image Analysis, Elsevier, May 2024. (Link)
       
268.  04/24      N. Sadok, G. Luijten, F. H. Bahnsen, C. Gsaxner, L. Peters, T. Eichler, T. Rombach, C. Seibold, S. Lang, S. Khattab, J. Egger, D. Holle-Lee, M. Meyer, J. Kleesiek
         “Eye tracker-based differentiation of causes of acute Vertigo: A mobile approach for faster and more accurate triage and diagnosis“
         In: Laryngorhinootologie 2024; 103(S 02): S185, Apr. 2024. (link)
       
267.  04/24      F. Jonske, K. Osthues, A. Dada, E. Nasca, J. Fragemann, J. Alff, O. Bakumenko, M. Birnbach, M. Kondratenko, L. Reinike, B. Schulz, F. Siethoff, T. Simon, J. Wang, N. Zhang, F. H. Bahnsen, J. Egger, M.-S. Kim, M. Lymbery, J. Kleesiek, J. Kraus
         “Designing and Implementing an Interactive Cloud Platform for Teaching Machine Learning with Medical Data“
         In Sipola, T., Alatalo, J., Wolfmayr, M., Kokkonen, T. (eds) Artificial Intelligence for Security. Springer, Cham., Apr. 2024. (Link)
       
266.  04/24      A. Ferreira, J. Li, K. L. Pomykala, J. Kleesiek, V. Alves, J. Egger
         “Corrigendum to: GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy“
         In: Medical Image Analysis, Elsevier, April 2024. (Link)
       
265.  04/24      A. Brehmer, C. M. Sauer, J. Salazar, K. Hermann, M. Kim, J. Keyl, F. H. Bahnsen, B. Frank, M. Köhrmann, T. Rassaf, A.-A. Mahabadi, B. Hadaschik, C. Darr, K. Herrmann, S. Tan, J. Buer, T. Brenner, C. Reinhardt, F. Nensa, M. Gertz, J. Egger, J. Kleesiek
         “Establishing medical intelligence - leveraging FHIR to improve clinical management“
         In: Journal of Critical Care 81, 154553, Elsevier, May 2024. (link)
       
264.  03/24      C. Gsaxner, G. Luijten, J. Li, J. Kleesiek, B. Puladi, J. Egger
         “Advancing Healthcare Through Open Science: StudierFenster and MedShapeNet“
         In: AIRoV - The First Austrian Symposium on AI, Robotics, and Vision 25.-27.3.2024, Innsbruck, Mar. 2024. (pdf)
       
263.  03/24      H. Hoffmann, I. Funke, P. Peters, D. K. Venkatesh, J. Egger, D. Rivoir, R. Röhrig, F. Hölzle, S. Bodenstedt, M.-C. Willemer, S. Speidel, B. Puladi
         “AIxSuture: vision-based assessment of open suturing skills”
         Int J CARS, Mar. 2024. (Link)
       
262.  03/24      C. Melchior, P. Isfort, T. Braunschweig, M. Witjes, V. Van den Bosch, A. Rashad, J. Egger, M. de la Fuente, R. Roehrig, F. Hoelzle, B. Puladi
         “Development and validation of a cadaveric porcine Pseudotumor model for Oral Cancer biopsy and resection training”
         BMC Med Educ 24, 250, Mar. 2024. (Link)
       
261.  03/24      F. Hörst, M. Rempe, L. Heine, C. Seibold, J. Keyl, G. Baldini, S. Ugurel, J. Siveke, B. Grünwald, J. Egger, J. Kleesiek
         “CellViT: Vision Transformers for Precise Cell Segmentation and Classification”
         Medical Image Analysis, Elsevier, Mar. 2024. (Link)
       
260.  02/24      F. Hörst, S. H. Schaheer, G. Baldini, F. H. Bahnsen, J. Egger, J. Kleesiek
         “Accelerating Artificial Intelligence-based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline”
         In: BVM 2024, Springer, pp. 356–361, 2024. (Link)
       
259.  02/24      J. J. E. Moors, Z. Xu, K. Xie, A. Rashad, J. Egger, R. Röhrig, F. Hölzle, B. Puladi
         “Full-thickness skin graft versus split-thickness skin graft for radial forearm free flap donor site closure: protocol for a systematic review and meta-analysis“
         In: Systematic Reviews, BMC, 2024. (Link)
       
258.  02/24      C. Gsaxner, S. Mori, G. Luijten, V. D. Vu, T. van Meegdenburg, G. Krombach, J. Kleesiek, U. Eck, N. Navab, Y. Guo, X. Chen, F. Hölzle, B. Puladi, J. Egger
         “Diminished Reality for Emerging Applications in Medicine through Inpainting“
         In: ISBI 2024 Challenge Description, Zenodo, pp. 1-16, 2024. (Link)
       
257.  02/24      M. Sallam, A. Al-Farajat, J. Egger
         “Envisioning the Future of ChatGPT in Healthcare: Insights and Recommendations from a Systematic Identification of Influential Research and a Call for Papers“
         In: Jordan Medical Journal, 58(1):95-108, Feb. 2024. (Link)
       
256.  02/24      M. Lindo, A. Ferreira, J. Egger, V. Alves
         “Generation of Synthetic X-Rays Images of Rib Fractures Using a 2D Enhanced Alpha-GAN for Data Augmentation”
         In: WorldCIST 2023, Springer, pp. 288-297, 2024. (Link)
       
255.  02/24      A. Pepe, G. M. Melito, J. Egger
         “Segmentation of the Aorta. Towards the Automatic Segmentation, Modeling, and Meshing of the Aortic Vessel Tree from Multicenter Acquisition“
         First Challenge, SEG.A. 2023, Held in Conjunction with MICCAI 2024, Vancouver, BC, Canada, Oct. 2024. (Link)
       
254.  02/24      G. M. Melito, A. Pepe, A. Jafarinia, T. Krispel, J. Egger
         “Optimizing Aortic Segmentation with an Innovative Quality Assessment: The Role of Global Sensitivity Analysis”
         In: MICCAI SEG.A Challenge Proceedings, Springer, pp. 110-126, 2024. (Link)
       
253.  02/24      B. Puladi, C. Gsaxner, J. Kleesiek, F. Hölzle, R. Röhrig, J. Egger
         “Response to the comment on The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review“
         In: International Journal of Oral and Maxillofacial Surgery, Elsevier, 2024. (Link)
       
252.  02/24      A. Ferreira, J. Li, K. L. Pomykala, J. Kleesiek, V. Alves, J. Egger
         “GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy“
         In: Medical Image Analysis, Elsevier, Feb. 2024. (Link) (IF 10.9 (2023))
       
251.  01/24      J. Egger, C. Gsaxner, J. Kleesiek, B. Puladi
         “What is Diminished Virtuality? A Directional and Layer-Based Taxonomy for the Reality-Virtuality Continuum“
         In: JMIR XR Spatial Computing, 1:e52904, 2024. (Link)
       
250.  01/24      C. Melzig, S. Hartmann, A. Steuwe, J. Egger, T. D. Do, P. Geisbüsch, H.-U. Kauczor, F. Rengier, M. A. Fink
         “BMI-Adapted Double Low-Dose Dual-Source Aortic CT for Endoleak Detection after Endovascular Repair: A Prospective Intra-Individual Diagnostic Accuracy Study”
         Diagnostics, 14(3), 280, 2024. (Link)
       
249.  01/24      J. Li, A. Dada, B. Puladi, J. Kleesiek, J. Egger
         “ChatGPT in Healthcare: A Taxonomy and Systematic Review”
         CMPB, Elsevier, pp. 1-40, 2024. (Link)
       
248.  01/24      L. Heine, F. Hörst, E. Nasca, J. Siveke, J. Egger, M. S. Kim, F. H. Bahnsen, J. Kleesiek
         “Lean Study Host: Towards an Automated Pipeline for Multi-Center Study Hosting”
         In: 57th HICSS 2024: Waikiki Beach, HI, USA, 2024. (Link)
       
247.  12/23      A. Dada, A. Chen, C. Peng, K. E. Smith, A. Idrissi-Yaghir, C. M. Seibold, J. Li, L. Heiliger, C. M. Friedrich, D. Truhn, J. Egger, J. Bian, J. Kleesiek, Y. Wu
         “On the Impact of Cross-Domain Data on German Language Models”
         Findings of the Association for Computational Linguistics: EMNLP, pp. 13801-13813, 2023. (Link)
       
246.  11/23      J. Li, C. Gsaxner, A. Pepe, D. Schmalstieg, J. Kleesiek, J. Egger
         “Sparse convolutional neural network for high-resolution skull shape completion and shape super-resolution”
         Scientific Reports volume 13, Article number: 20229, 2023. (Link)
       
245.  11/23      G. Luijten, C. Gsaxner, J. Li, A. Pepe, N. Ambigapathy, M. Kim, X. Chen, J. Kleesiek, F. Hölzle, B. Puladi, J. Egger
         “3D surgical instrument collection for computer vision and extended reality”
         Sci. Data, 10(796), pp. 1-12, Springer, Nov. 2023. (Link) (IF 9.8 (2022))
       
244.  11/23      M. Rempe, F. Mentzel, K. L. Pomykala, J. Haubold, F. Nensa, K. Kröninger, J. Egger, J. Kleesiek
         “k-strip: A novel segmentation algorithm in k-space for the application of skull stripping”
         Computer Methods and Programs in Biomedicine, Elsevier, Nov. 2023. (Link) (IF 6.1 (2022))
       
243.  10/23      C. Strack, K. L. Pomykala, H.-P. Schlemmer, J. Egger, J. Kleesiek
         “A net for everyone: fully personalized and unsupervised neural networks trained with longitudinal data from a single patient”
         BMC Med Imaging 23, 174, pp. 1-9, 2023. (Link)
       
242.  10/23      C. Wachinger, B. Paniagua, S. Elhabian, J. Li, J. Egger
         “Shape in Medical Imaging“
         International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings, Oct. 2023. (Link)
       
241.  10/23      J. Li, A. Pepe, G. Luijten, C. Schwarz-Gsaxner, J. Kleesiek, J. Egger
         “Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction”
         In: Wachinger, C., Paniagua, B., Elhabian, S., Li, J., Egger, J. (eds) Shape in Medical Imaging. ShapeMI 2023. Lecture Notes in Computer Science, vol 14350. Springer, Cham., pp. 1-14, 2023. (Link)
       
240.  10/23      L. J. Gruber, J. Egger, A. Bönsch, J. Kraeima, M. Ulbrich, V. van den Bosch, I. Motmaen, C. Wilpert, M. Ooms, P. Isfort, F. Hölzle, B. Puladi
         “Accuracy and Precision of Mandible Segmentation and Its Clinical Implications: Virtual Reality, Desktop Screen and Artificial Intelligence”
         Expert Systems with Applications (ESWA), Elsevier, pp. 1-18, 2023. (Link)
       
239.  10/23      B. Puladi, C. Gsaxner, J. Kleesiek, F. Hölzle, R. Röhrig, J. Egger
         “The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review”
         International Journal of Oral and Maxillofacial Surgery, Elsevier, pp. 1-11, 2023. (Link)
       
238.  09/23      N. Fijačko, Š. Metličar, J. Kleesiek, J. Egger, T. P. Chang
         “Virtual Reality, Augmented Reality, Augmented Virtuality, or Mixed Reality in Cardiopulmonary Resuscitation: Which Extended Reality am I Using for Teaching Adult Basic Life Support?“
         In: Resuscitation, 109973, ISSN 0300-9572, 2023. (Link)
       
237.  08/23      A. Pepe, J. Egger, M. Codari, M. J. Willemink, C. Gsaxner, J. Li, P. M. Roth, D. Schmalstieg, G. Mistelbauer, D. Fleischmann
         “Automated cross-sectional view selection in CT angiography of aortic dissections with uncertainty awareness and retrospective clinical annotations”
         Computers in Biology and Medicine, Elsevier, pp. 1-44, 2023. (Link)
       
236.  08/23      F. Hörst, S. Ting, S.-T. Liffers, K. L Pomykala, K. Steiger, M. Albertsmeier, M. K. Angele, S. Lorenzen, M. Quante, W. Weichert, J. Egger, J. T. Siveke, J. Kleesiek
         “Histology-based Prediction of Therapy Response to Neoadjuvant Chemotherapy for Esophageal and Esophagogastric Junction Adenocarcinomas Using Deep Learning”
         Cancer Informatics no. 7, e2300038, 2023. (Link) (IF 4.2 (2022))
       
235.  07/23      L. Adilova, A. Abourayya, J. Li, A. Dada, H. Petzka, J. Egger, J. Kleesiek, M. Kamp
         “FAM: Relative Flatness Aware Minimization”
         Proceedings of 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning (TAG-ML), PMLR 221:37-49, 2023. (Link)
       
234.  07/23      A. Dada, T. L. Ufer, M. Kim, M. Hasin, N. Spieker, M. Forsting, F. Nensa, J. Egger, J. Kleesiek
         “Information extraction from weakly structured radiological reports with natural language queries”
         European Radiology, pp. 1-8, 2023. (Link) (IF 5.9 (2022))
       
233.  07/23      T. van Meegdenburg, J. Kleesiek, J. Egger, S. Perrey
         “Improvement in Disease Diagnosis in Computed Tomography Images by Correlating Organ Volumes with Disease Occurrences in Humans”
         BioMedInformatics, 3(3), pp. 526-542, 2023. (Link)
       
232.  06/23      M. Eisenmann, et al.
         “Why is the winner the best?”
         The IEEE / CVF Computer Vision and Pattern Recognition Conference (CVPR), pp. 19955-19966, June 2023. (Link)
       
231.  06/23      J. Li, A. Ferreira, B. Puladi, V. Alves, M. Kamp, M.-S. Kim, F. Nensa, J. Kleesiek, S.-A. Ahmadi, J. Egger
         “Open-Source Skull Reconstruction with MONAI”
         SoftwareX, Volume 23, 101432, pp. 1-6, 2023. (Link)
       
230.  06/23      J. Li, D. G. Ellis, O. Kodym, L. Rauschenbach, C. Rieß, U. Sure, K. H. Wrede, C. M. Alvarez, M. Wodzinski, M. Daniol, D. Hemmerling, H. Mahdi, A. Clement, E. Kim, Z. Fishman, C. M. Whyne, J. G. Mainprize, M. R. Hardisty, S. Pathak, C. Sindhura, R. K. S. S. Gorthi, D. V. Kiran, S. Gorthi, B. Yang, K. Fang, X. Li, A. Kroviakov, L. Yu, Y. Jin, A. Pepe, C. Gsaxner, A. Herout, V. Alves, M. Španěl, M. R. Aizenberg, J. Kleesiek, J. Egger
         “Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge“
         In: Medical Image Analysis, Elsevier, Jun. 2023. (Link) (IF 13.828 (2021))
       
229.  05/23      O. Ester, F. Hörst, C. Seibold, J. Keyl, S. Ting, N. Vasileiadis, J. Schmitz, P. Ivanyi, V. Grünwald, J. H. Bräsen, J. Egger, J. Kleesiek
         “Valuing Vicinity: Memory attention framework for context-based semantic segmentation in histopathology”
         Computerized Medical Imaging and Graphics (CMIG), 102238, 2023. (Link) (IF 7.422 (2021))
       
228.  04/23      A. Pepe, G. M. Melito, J. Li, Y. Jin, F.-h. Zhao, H. Mächler, A. F. Frangi, D. Schmalstieg, G. A. Holzapfel, J. Kleesiek, J. Egger
         “Towards the Automatic Segmentation, Modeling and Meshing of the Aortic Vessel Tree from Multicenter Acquisitions“
         In: MICCAI 2023 Challenge Description, Zenodo, pp. 1-34, 2023. (Link)
       
227.  05/20      A. Masur, J. Egger
         “GrowCut under StudierFenster“
         In: The 27th Central European Seminar on Computer Graphics (CESCG), pp. 1-2, May 2023. (Link)
       
226.  04/23      J. Kleesiek, Y. Wu, G. Stiglic, J. Egger, J. Bian
         “An Opinion on ChatGPT in Health Care - Written by Humans Only“
         In: Journal of Nuclear Medicine, Editorial, 265687; Apr. 2023. (Link)
       
225.  02/23      T. Huebner, A. Berger, D. Wild, J. Li, A. Pepe, C. Gsaxner, Y. Jin, G. Luijten, J. Kleesiek, J. Egger
         “A web-based radiomics module for image feature extraction for tumor characterization”
         SPIE Medical Imaging, San Diego, USA, Feb. 2023.
       
224.  02/23      B. Scharinger, A. Pepe, Y. Jin, C. Gsaxner, J. Li, J. Egger
         “Multicenter aortic vessel tree extraction using deep learning”
         SPIE Medical Imaging, San Diego, USA, Feb. 2023.
       
223.  03/23      M. Kim, R. Seifert, J. Fragemann, D. Kersting, J. Murray, F. Jonske, K. L. Pomykala, J. Egger, W. P. Fendler, K. Herrmann, J. Kleesiek
         “Evaluation of thresholding methods for the quantification of [68Ga]Ga-PSMA-11 PET molecular tumor volume and their effect on survival prediction in patients with advanced prostate cancer undergoing [177Lu]Lu-PSMA-617 radioligand therapy“
         In: European Journal of Nuclear Medicine and Molecular Imaging, Springer, Mar. 2023. (Link) (IF 10.057 (2021))
       
222.  02/23      J. Fragemann, J. Li, X. Liu, S. A. Tsaftaris, J. Egger, J. Kleesiek
         “Medical Applications with Disentanglements“
         First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings, Springer, volume 13823, pp. 1-128, ISBN: 978-3-031-25045-3, Feb. 2023. (Link)
       
221.  03/23      J. Li, J. Fragemann, S.-A. Ahmad, J. Kleesiek, J. Egger
         “Training β-VAE by Aggregating a Learned Gaussian Posterior with a Decoupled Decoder“
         In: MICCAI MAD, Springer, pp. 70-92, Feb. 2023.
       
220.  03/23      J. Fragemann, J. Li, X. Liu, S. A. Tsaftaris, J. Egger, J. Kleesiek
         “Applying Disentanglement in the Medical Domain: An Introduction for the MAD Workshop“
         In: MICCAI MAD, Springer, pp. 03-11, Feb. 2023.
       
219.  01/23      C. Gsaxner, J. Li, A. Pepe, Y. Jin, J. Kleesiek, D. Schmalstieg, J. Egger
         “The HoloLens in Medicine: A systematic Review and Taxonomy“
         In: Medical Image Analysis, Elsevier, Jan. 2023. (Link) (IF 13.828 (2021))
       
218.  11/22      M. Gonçalves, C. Gsaxner, A. Ferreira, J. Li, B. Puladi, J. Kleesiek, J. Egger, V. Alves
         “Radiomics in Head and Neck Cancer Outcome Predictions”
         Diagnostics 2022, 12(11), 2733, Nov. 2022. (Link) (IF 3.992 (2021))
       
217.  10/22      S. Ranftl, M. Rolf-Pissarczyk, G. Wolkerstorfer, A. Pepe, J. Egger, W. von der Linden, G. A. Holzapfel
         “Stochastic modeling of inhomogeneities in the aortic wall and uncertainty quantification using a Bayesian encoder–decoder surrogate”
         Computer Methods in Applied Mechanics and Engineering, Volume 401, Part B, 115594, Oct. 2022. (Link) (IF 6.588 (2021))
       
216.  07/22      J. Xu, B Zeng, J. Egger, C. Wang, Ö. Smedby, X. Jiang, X. Chen
         “A review on AI-based medical image computing in head and neck surgery”
         Physics in Medicine & Biology, IOP Publishing, July 2022. (Link) (IF 4.174 (2021))
       
215.  07/22      H. Sulakhe, J. Li, J. Egger, P. Goyal
         “CranGAN: Adversarial Point Cloud Reconstruction for patient-specific Cranial Implant Design”
         IEEE EMBC, Glasgow, Scotland, Jul. 2022. (Link)
       
214.  07/22      S. Ranftl, M. Rolf-Pissarczyk, G. Wolkerstorfer, A. Pepe, J. Egger, G. A. Holzapfel, W. von der Linden
         “Modelling of aortic dissection with Beta random fields and uncertainty propagation with a Bayesian variational auto-encoder“
         In: 41st MaxEnt2022 Conference, Paris, France, July 2022.
       
213.  07/22      F. Jonske, M. Dederichs, M.-S. Kim, J. Keyl, J. Egger, L. Umutlu, M. Forsting, F. Nensa, J. Kleesiek
         “Deep Learning–driven classification of external DICOM studies for PACS archiving”
         European Radiology, Springer, July 2022. (Link) (IF 7.034 (2021))
       
212.  05/22      J. Egger, C. Gsaxner, A. Pepe, K. L. Pomykala, F. Jonske, M. Kurz, J. Li, J. Kleesiek
         “Medical Deep Learning - A systematic Meta-Review”
         Computer Methods and Programs in Biomedicine (CMPB), Elsevier, May 2022. (Link) (IF 7.027 (2020))
       
211.  02/22      P. Ganster, M. Weber, D. Wild, C. Gsaxner, N. Schellnegger, J. Egger
         “Bringing any medical 3D scan onto augmented reality hardware: a streamlined data pipeline”
         SPIE Medical Imaging, San Diego, USA, Feb. 2022.
       
210.  02/22      L. Petrelli, A. Pepe, A. Disanto, C. Gsaxner, J. Li, Y. Jin, D. Buongiorno, A. Brunetti, V. Bevilacqua, J. Egger
         “Geometric modeling of aortic dissections through convolution surfaces”
         SPIE Medical Imaging, San Diego, USA, Feb. 2022.
       
209.  02/22      A. Disanto, A. Pepe, L. Petrelli, C. Gsaxner, J. Li, Y. Jin, A. Brunetti, D. Buongiorno, J. Egger, V. Bevilacqua
         “Enhancement of aortic dissections in CT angiography: are common filters robust enough?”
         SPIE Medical Imaging, San Diego, USA, Feb. 2022.
       
208.  01/22      J. Egger, D. Wild, M. Weber, C. A. Ramirez Bedoya, F. Karner, A. Prutsch, M. Schmied, C. Dionysio, D. Krobath, Y. Jin, C. Gsaxner, J. Li, A. Pepe
         “Studierfenster: an Open Science Cloud-Based Medical Imaging Analysis Platform“
         In: J Digit Imaging, Springer, pp. 1-16, 2022. (Link) (IF 4.903 (2020))
       
207.  01/22      L. Radl, Y. Jin, A. Pepe, J. Li, C. Gsaxner, F. Zhao, J. Egger
         “AVT: Multicenter Aortic Vessel Tree CTA Dataset Collection with Ground Truth Segmentation Masks“
         In: Data in Brief (DIB), Elsevier, 107801, 2022. (Link) (IF n/a (2020))
       
206.  12/21      C. Gsaxner, J. Li, A. Pepe, D. Schmalstieg, J. Egger
         “Inside-Out Instrument Tracking for Surgical Navigation in Augmented Reality”
         ACM Symposium on Virtual Reality Software and Technology (VRST), Osaka University, Osaka, Japan, Dec. 2021. (Link) (Paper) (Video) (Code)
       
205.  12/21      J. Li, J. Egger
         “Towards the Automatization of Cranial Implant Design in Cranioplasty II“
         Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021, Proceedings, Springer, volume 13123, pp. 1-129, ISBN: 9783030926519, 12 2021. (Link)
       
204.  12/21      L. Yu, J. Li, J. Egger
         “PCA-Skull: 3D Skull Shape Modelling Using Principal Component Analysis“
         In: MICCAI AICIDC II, Springer, pp. 105-115, 12 2021.
       
203.  12/21      A. Kroviakov, J. Li, J. Egger
         “Sparse Convolutional Neural Network for Skull Reconstruction“
         In: MICCAI AICIDC II, Springer, pp. 80-94, 12 2021.
       
202.  12/21      J. Li, A. Pepe, C. Gsaxner, Y. Jin, J. Egger
         “Learning to Rearrange Voxels in Binary Segmentation Masks for Smooth Manifold Triangulation“
         In: MICCAI AICIDC II, Springer, pp. 45-62, 12 2021.
       
201.  11/21      J. Egger, A. Pepe, C. Gsaxner, Y. Jin, J. Li, R. Kern
         “Deep Learning – A first Meta-Survey of selected Reviews across Scientific Disciplines, their Commonalities, Challenges and Research Impact”
         PeerJ Comput. Sci. 7:e773, pp. 1-83, 2021. (Link) (IF 2.411 (2021))
       
200.  11/21      J. Li, M. Krall, F. Trummer, A. R. Memon, A. Pepe, C. Gsaxner, Y. Jin, X. Chen, H. Deutschmann, U. Zefferer, U. Schäfer, G. von Campe, J. Egger
         “MUG500+: Database of 500 High-resolution Healthy Human Skulls and 29 Craniotomy Skulls and Implants“
         In: Data in Brief (DIB), Elsevier, 107524, ISSN 2352-3409, 2021. (Link) (IF n/a (2020))
       
199.  08/21      A.R. Memon, J. Li, J. Egger, X. Chen
         “A Review on Patient-Specific Facial and Cranial Implant Design using Artificial Intelligence (AI) Techniques”
         Expert Review of Medical Devices, Taylor & Francis, August 2021. (Link) (IF 3.439 (2021))
       
198.  08/21      J. Wallner, M. Schwaiger, S.-J. Edmondson, I. Mischak, J. Egger, M. Feichtinger, W. Zemann, M. Pau
         “Effects of Pre-Operative Risk Factors on Intensive Care Unit Length of Stay (ICU-LOS) in Major Oral and Maxillofacial Cancer Surgery“
         In: Cancers, Special Issue Head and Neck Cancer Imaging and Image Analysis, MDPI, pp. 1-17, 2021. (Link) (IF 6.575 (2021))
       
197.  07/21      J. Li, G. von Campe, A. Pepe, C. Gsaxner, E. Wang, X. Chen, U. Zefferer, M. Toedtling, M. Krall, H. Deutschmann, U. Schaefer, D. Schmalstieg, J. Egger
         “Automatic Skull Defect Restoration and Cranial Implant Generation for Cranioplasty“
         In: Medical Image Analysis, Elsevier, pp. 1-18, 2021. (Link) (IF 13.828 (2021))
       
196.  05/21      J. Li, P. Pimentel, A. Szengel, M. Ehlke, H. Lamecker, S. Zachow, L. Estacio, C. Doenitz, H. Ramm, H. Shi, X. Chen, F. Matzkin, V. Newcombe, E. Ferrante, Y. Jin, D. G. Ellis, M. R. Aizenberg, O. Kodym, M. Španěl, A. Herout, J. G. Mainprize, Z. Fishman, M. R. Hardisty, A. Bayat, S. Shit, B. Wang, Z. Liu, M. Eder, A. Pepe, C. Gsaxner, V. Alves, U. Zefferer, G. von Campe, K. Pistracher, U. Schäfer, D. Schmalstieg, B. H. Menze, B. Glocker, J. Egger
         “AutoImplant 2020 - First MICCAI Challenge on Automatic Cranial Implant Design“
         In: IEEE Transactions on Medical Imaging (TMI), 15 pages, 2021. (Link) (IF 11.037 (2021))
       
195.  04/21      J. Egger, X. Chen
         “Computer-Aided Oral and Maxillofacial Surgery - Developments, Applications, and Future Perspectives“
         Elsevier, 10 Chapters, 282 pages, ISBN: 978-0-12-823299-6, April 2021.
       
194.  04/21      C. Gsaxner, U. Eck, D. Schmalstieg, N. Navab, J. Egger
         “Augmented reality in oral and maxillofacial surgery“
         Computer-Aided Oral and Maxillofacial Surgery, Elsevier, Chapter 5, pp. 107-139, ISBN: 978-0-12-823299-6, April 2021.
       
193.  04/21      M. Gonçalves, C. Gsaxner, J. Egger, V. Alves
         “Radiomics in head and neck cancer“
         Computer-Aided Oral and Maxillofacial Surgery, Elsevier, Chapter 4, pp. 83-105, ISBN: 978-0-12-823299-6, April 2021.
       
192.  04/21      A. Pepe, G.F. Trotta, C. Gsaxner, A. Brunetti, G.D. Cascarano, V. Bevilacqua, D. Shen, J. Egger
         “Deep learning and generative adversarial networks in oral and maxillofacial surgery“
         Computer-Aided Oral and Maxillofacial Surgery, Elsevier, Chapter 3, pp. 55-82, ISBN: 978-0-12-823299-6, April 2021.
       
191.  04/21      J. Li, M. Erdt, F. Janoos, T. Chang, J. Egger
         “Medical image segmentation in oral-maxillofacial surgery“
         Computer-Aided Oral and Maxillofacial Surgery, Elsevier, Chapter 1, pp. 1-27, ISBN: 978-0-12-823299-6, April 2021.
       
190.  03/21      J. Li, O. Kodym, D. G. Ellis, M. Španěl, M. R. Aizenberg, V. Alves, G. von Campe, J. Egger
         “Towards the Automatization of Cranial Implant Design in Cranioplasty: 2nd MICCAI Challenge on Automatic Cranial Implant Design“
         In: MICCAI 2021 Challenge Description, Zenodo, pp. 1-30, 2021. (Link)
       
189.  02/21      O. Kodym, J. Li, A. Pepe, C. Gsaxner, S. Chilamkurthy, J. Egger, M. Španěl
         “SkullBreak / SkullFix – Dataset for Automatic Cranial Implant Design and a Benchmark for Volumetric Shape Learning Tasks“
         In: Data in Brief (DIB), Elsevier, 106902, ISSN 2352-3409, 2021. (Link)
       
188.  02/21      C. Dionysio, D. Wild, A. Pepe, C. Gsaxner, J. Li, L. Alvarez, J. Egger
         “A cloud-based centerline algorithm for Studierfenster“
         In: SPIE Medical Imaging 2021, 6 pages, Feb. 2021.
       
187.  02/21      J. Li, A. Pepe, C. Gsaxner, J. Egger
         “An online platform for automatic skull defect restoration and cranial implant design“
         In: SPIE Medical Imaging 2021, 8 pages, Feb. 2021.
       
186.  02/21      C.A. Ramirez Bedoyaa, D. Wild, A. Pepe, C. Gsaxner, J. Li, J. Egger
         “A web client-based online DICOM browser and NRRD converter for Studierfenster“
         In: SPIE Medical Imaging 2021, 6 pages, Feb. 2021.
       
185.  02/21      Y. Jin, A. Pepe, J. Li, C. Gsaxner, J. Egger
         “Deep learning and particle filter-based aortic dissection vessel tree segmentation“
         In: SPIE Medical Imaging 2021, 6 pages, Feb. 2021.
       
184.  02/21      M. Schmied, A. Pepe, J. Li, Y. Jin, C. Gsaxner, J. Egger
         “A patch-based-approach for aortic landmarking“
         In: SPIE Medical Imaging 2021, 6 pages, Feb. 2021.
       
183.  01/21      J. Li, C. Gsaxner, A. Pepe, A. Morais, V. Alves, G. von Campe, J. Wallner, J. Egger
         “Synthetic skull bone defects for automatic patient-specific craniofacial implant design“
         In: Scientific Data, volume 8, Article number: 36, 2021. (Link) (IF 8.501 (2021))
       
182.  12/20      A. J. Lungu, W. Swinkels, L. Claesen, P. Tu, J. Egger, X. Chen
         “A Review on the Applications of Virtual Reality, Augmented Reality and Mixed Reality in Surgical Simulation: An Extension to Different Kinds of Surgery”
         Expert Review of Medical Devices, Taylor & Francis, December 2020.
       
181.  12/20      J. Li, J. Egger
         “Towards the Automatization of Cranial Implant Design in Cranioplasty“
         First Challenge, AutoImplant 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 8, 2020, Proceedings, Springer, volume 12439, pp. 1-115, ISBN: 3030643263, December 2020.
       
180.  12/20      M. Eder, J. Li, J. Egger
         “Learning Volumetric Shape Super-Resolution for Cranial Implant Design“
         In: MICCAI AICIDC, Springer, pp. 104-113, Dec. 2020.
       
179.  12/20      Y. Jin, J. Li, J. Egger
         “High-Resolution Cranial Implant Prediction via Patch-Wise Training“
         In: MICCAI AICIDC, Springer, pp. 94-103, Dec. 2020.
       
178.  12/20      J. Li, J. Egger
         “Dataset Descriptor for the AutoImplant CranialImplant Design Challenge“
         In: MICCAI AICIDC, Springer, pp. 10-15, Dec. 2020.
       
177.  11/20      Y. Li, J. Hu, J. Xu, B. Tao, D. Yu, Y. Shen, Y. Wu, J. Egger, X. Chen
         “A novel robot-world calibration in surgical robot system for zygomatic implant placement based on its motion characteristics and mechanical structure“
         In: 8th European Medical and Biological Engineering Conference (EMBEC 2020), Portorož, Slovenia, Page 37, November 2020. (pdf)
       
176.  11/20      C. Gsaxner, A. Pepe, J. Li, U. Ibrahimpasic, J. Wallner, D. Schmalstieg, J. Egger
         “Augmented Reality for Head and Neck Carcinoma Imaging: Description and Feasibility of an Instant Calibration, Markerless Approach”
         Computer Methods and Programs in Biomedicine, Elsevier, 2020.
       
175.  11/20      A. Pepe, D. Fleischmann, D. Schmalstieg, J. Egger
         “Visual computing of dissected aortae”
         Technical Report for the Austrian Marshall Plan Foundation, pp. 1-32, 2020.
       
174.  10/20      A. Pepe, G. Mistelbauer, C. Gsaxner, J. Li, D. Fleischmann, D. Schmalstieg, J. Egger
         “Semi-supervised Virtual Regression of Aortic Dissections Using 3D Generative Inpainting“
         In: MICCAI TIA, 11 pages, Oct. 2020.
       
173.  10/20      F. Karner, C. Gsaxner, A. Pepe, J. Li, P. Fleck, C. Arth, J. Wallner, J. Egger
         “Single-shot Deep Volumetric Regression for Mobile Medical Augmented Reality“
         In: MICCAI CLIP (Best Paper Award), 11 pages, Oct. 2020.
       
172.  10/20      J. Li, A. Pepe, C. Gsaxner, G. von Campe, J. Egger
         “A Baseline Approach for AutoImplant: the MICCAI 2020 Cranial Implant Design Challenge“
         In: MICCAI CLIP, 10 pages, Oct. 2020.
       
171.  07/20      A. Pepe, J. Li, M. Rolf-Pissarczyk, C. Gsaxner, X. Chen, G. A. Holzapfel, J. Egger
         “Detection, Segmentation, Simulation and Visualization of Aortic Dissections: A Review“
         In: Medical Image Analysis, Elsevier, pp. 1-19, 2020. (IF 8.501 (2020))
       
170.  05/20      A. Prutsch, A. Pepe, J. Egger
         “Design and Development of a Web-based Tool for Inpainting of Dissected Aortae in Angiography Images“
         In: The 24th Central European Seminar on Computer Graphics (CESCG), pp. 1-8, May 2020.
       
169.  03/20      J. Egger, J. Li, X. Chen, U. Schäfer, G. von Campe, M. Krall, U. Zefferer, C. Gsaxner, A. Pepe, D. Schmalstieg
         “Towards the Automatization of Cranial Implant Design in Cranioplasty: Structured description of the challenge design“
         In: MICCAI 2020 Challenge Description, Zenodo, pp. 1-14, 2020. (Link)
       
168.  02/20      A.R. Memon, E. Wang, J. Hu, J. Egger, X. Chen
         “A review on computer-aided design and manufacturing of patient-specific maxillofacial implants“
         In: Expert Rev Med Devices, Taylor & Francis Group, pp. 1-12, 2020.
       
167.  02/20      A. Pepe, R. Schussnig, J. Li, C. Gsaxner, X. Chen, T.-P. Fries, J. Egger
         “IRIS: Interactive Real-Time Feedback Image Segmentation with deep learning“
         In: Proc. SPIE 11317, Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging, 113170R, 2020.
       
166.  02/20      J. Egger, S. Gunacker, A. Pepe, G. M. Melito, C. Gsaxner, J. Li, K. Ellermann, X. Chen
         “A comprehensive workflow and framework for immersive Virtual Endoscopy of dissected aortae from CTA data“
         In: Proc. SPIE 11315, Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling, 1131531, pp. 2020.
       
165.  12/19      C. Gsaxner, J. Wallner, X. Chen, W. Zemann, J. Egger
         “Facial model collection for medical augmented reality in oncologic cranio-maxillofacial surgery“
         In: Scientific Data 6(1):310, 2019.
       
164.  10/19      C. Gsaxner, A. Pepe, J. Wallner, D. Schmalstieg, J. Egger
         “Markerless Image-to-Face Registration for Untethered Augmented Reality in Head and Neck Surgery“
         In: MICCAI, pp. 236-244, Oral (~3% Acceptance Rate) and Runners-up (15 Finalists out of 1729 Submissions, <1%), Oct. 2019. (pdf)
       
163.  09/19      J. Wallner, M. Schwaiger, K. Hochegger, C. Gsaxner, W. Zemann, J. Egger
         “A Review on Multiplatform Evaluations of Semi-Automatic Open-Source Based Image Segmentation for Cranio-Maxillofacial Surgery“
         In: Computer Methods and Programs in Biomedicine, 182:105102, pp. 1-23, Sep. 2019.
       
162.  09/19      A. Pepe, G. F. Trotta, P. Mohr-Ziak, C. Gsaxner, J. Wallner, V. Bevilacqua, J. Egger
         “A Marker-Less Registration Approach for Mixed Reality–Aided Maxillofacial Surgery: a Pilot Evaluation“
         In: Journal of Digital Imaging, 32, pp. 1008-1018, Sep. 2019.
       
161.  08/19      M. Sylos Labini, C. Gsaxner, A. Pepe, J. Wallner, J. Egger, V. Bevilacqua
         “Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures“
         In: International Conference on Intelligent Computing (ICIC), Intelligent Computing Methodologies, pp. 716-726, Nanchang, China, Aug. 2019.
       
160.  07/19      L. Lindner, D. Narnhofer, M. Weber, C. Gsaxner, M. Kolodziej, J. Egger
         “Using Synthetic Training Data for Deep Learning-Based GBM Segmentation“
         In: IEEE EMBC, Jul. 2019.
       
159.  07/19      M. Weber, D. Wild, J. Wallner, J. Egger
         “A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores“
         In: IEEE EMBC, Jul. 2019.
       
158.  07/19      M. Pau, J. Wallner, M. Feichtinger, M. Schwaiger, J. Egger, J. Cambiaso-Daniel, R. Winter, N. Jakse, W. Zemann
         “Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects“
         In: Journal of Cranio-Maxillofacial Surgery, 47(10):1617-1625, Jul. 2019.
       
157.  05/19      C. Gsaxner, P. M. Roth, J. Wallner, J. Egger
         “Learning from the Truth: Fully Automatic Ground Truth Generation for Training of Medical Deep Learning Networks“
         In: ARW/OAGM Workshop, Steyr, Austria, May 2019.
       
156.  04/19      D. Wild, M. Weber, J. Egger
         “A Client/Server Based Online Environment for Manual Segmentation of Medical Images“
         In: The 23rd Central European Seminar on Computer Graphics (CESCG), pp. 1-8, Apr. 2019.
       
155.  03/19      R. Morais, J. Egger, V. Alves
         “Automated Computer-aided Design of Cranial Implants using a Deep Volumetric Convolutional Denoising Autoencoder“
         In: WorldCist'19, pp. 151-160, Mar. 2019.
       
154.  03/19      C. Gsaxner, P. Roth, J. Wallner, J. Egger
         “Exploit fully automatic low-level segmented PET Data for training high-level Deep Learning Algorithms for the corresponding CT Data“
         In: PLoS ONE 14(3): e0212550, Mar. 2019. (Link) (thesis)
       
153.  01/19      J. Wallner, I Mischak, J. Egger
         “Computed tomography data collection of the complete human mandible and valid clinical ground truth models“
         In: Scientific Data volume 6, Article number: 190003, 2019. (Link)
       
152.  11/18      A. Pepe, G. F. Trotta, J. Wallner, C. Gsaxner, D. Schmalstieg, J. Egger, V. Bevilacqua
         “Pattern Recognition and Mixed Reality for Computer- Aided Maxillofacial Surgery and Oncological Assessment“
         In: IEEE Biomedical Engineering International Conference (BMEiCON2018), Chiang Mai, Thailand, Nov. 2018. (Best Paper Award)
       
151.  11/18      C. Gsaxner, B. Pfarrkirchner, L. Lindner, A. Pepe, P. M. Roth, J. Wallner, J. Egger
         “PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning“
         In: IEEE Biomedical Engineering International Conference (BMEiCON2018), Chiang Mai, Thailand, Nov. 2018.
       
150.  07/18      J. Egger, B. Pfarrkirchner, C. Gsaxner, L. Lindner, D. Schmalstieg, J. Wallner
         “Fully Convolutional Mandible Segmentation on a valid Ground-Truth Dataset“
         In: IEEE Engineering in Medicine and Biology Conference (EMBC), 5 pages, Honolulu, Hawaii, Jul. 2018.
       
149.  05/18      J. Wallner, K. Hochegger, X. Chen, I. Mischak, K. Reinbacher, M. Pau, T. Zrnc, K. Schwenzer-Zimmerer, W. Zemann, D. Schmalstieg, J. Egger
         “Clinical evaluation of semi-automatic opensource algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action“
         In: PLoS ONE 13(5): e0196378, May 2018. (Link)
       
148.  05/18      S. Bruneder, J. Wallner, A. Weiglein, K. Ludmila, J. Egger, U. Pilsl, W. Zemann
         “Anatomy of the Le Fort I segment: Are arterial variations a potential risk factor for avascular bone necrosis in Le Fort I osteotomies?“
         In: Journal of Cranio-Maxillofacial Surgery, 46(8):1285-1295, May 2018.
       
147.  03/18      A. Hann, E. Nosalski, P.C. Hermann, J. Egger, T. Seufferlein, F. Keller
         “Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: a systematic review
“
         In: Clinical Nephrology - Dustri-Verlag, pp. 1-17, Mar. 2018.
       
146.  02/18      L. Lindner, B. Pfarrkirchner, C. Gsaxner, D. Schmalstieg, J. Egger
         “TuMore: generation of synthetic brain tumor MRI data for deep learning based segmentation approaches“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10579-63, Houston, TX, USA, Feb. 2018.
       
145.  02/18      S. Gunacker, M. Gall, D. Schmalstieg, J. Egger
         “Multi-threaded integration of HTC-Vive and MeVisLab“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10579-51, Houston, TX, USA, Feb. 2018.
       
144.  02/18      B. Pfarrkirchner, C. Gsaxner, L. Lindner, N. Jakse, J. Wallner, D. Schmalstieg, J. Egger
         “Lower jawbone data generation for deep learning tools under MeVisLab“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10578-96, Houston, TX, USA, Feb. 2018.
       
143.  02/18      C. Gsaxner, B. Pfarrkirchner, L. Lindner, N. Jakse, J. Wallner, D. Schmalstieg, J. Egger
         “Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10578-70, Houston, TX, USA, Feb. 2018.
       
142.  11/17      J. Egger, C. Nimsky, X. Chen
         “Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application“
         In: SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017. (Link) (pdf)
       
141.  11/17      J. Hu, P. Sun, J. Egger, X. Chen
         “The Simulation of Catheter Interventional Surgery Based on Virtual Reality“
         In: 29th Conference of the international Society for Medical Innovation and Technology (SMIT), Lingotto Congress Center, Torino, Italy, Nov. 2017.
       
140.  11/17      Y. Chen, D. Liao, X. Chen, J. Egger
         “A VR-based surgical simulation system using patient- specific physical computing model“
         In: 29th Conference of the international Society for Medical Innovation and Technology (SMIT), Lingotto Congress Center, Torino, Italy, Nov. 2017.
       
139.  10/17      A. Hann, L. Bettac, M. M. Haenle, T. Graeter, A. W. Berger, J. Dreyhaupt, D. Schmalstieg, W. G. Zoller, J. Egger
         “Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound“
         In: Sci. Rep. 7, 12779, 2017. (Link)
       
138.  09/17      J. Egger, P. Umschaden, X. Chen, P. Fleck, C. Arth, D. Schmalstieg
         “Augmented Reality (AR)-guided intraoperative Navigation“
         In: Partnering Day 2017 - Health Tech Innovations for Successful Business, Krone Center, Graz, Austria, Sep. 2017.
       
137.  08/17      J. Egger, X. Chen, L. Bettac, M. Hänle, T. Gräter, W. Zoller, D. Schmalstieg, A. Hann
         “In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine“
         In: IEEE Biomedical Engineering International Conference (BMEiCON2017), Hokkaido, Japan, Aug. 2017. (pdf)
       
136.  08/17      J. Egger, J. Wallner, M. Gall, X. Chen, K. Schwenzer-Zimmerer, K. Reinbacher, D. Schmalstieg
         “Computer-aided position planning of miniplates to treat facial bone defects“
         In: PLoS ONE 12(8): e0182839, Aug. 2017. (Link)
       
135.  06/17      X. Chen, L. Xu, X. Li, J. Egger
         “Computer-aided implant design for the restoration of cranial defects“
         In: Sci. Rep. 7, 4199, 2017. (Link)
       
134.  06/17      P. Jia, L. Xu, X. Chen, J. Egger
         “An intensity-based rigid registration of 2D C-Arm and 3D CT images for image-assisted navigation system“
         In: Proceedings of the 31st International Congress and Exhibition of Computer Assisted Radiology and Surgery (CARS), Barcelona, Spain, June 2017.
       
133.  04/17      A. Hann, D. Schmalstieg, X. Chen, W. G. Zoller, J. Egger
         “Interactive algorithm for the measurement of pancreatic cancer liver metastases in ultrasound“
         In: Der Internist, Volume 58, Supplement 1, S9, Mar. 2017.
       
132.  04/17      J. Egger, D. Schmalstieg, X. Chen, W. G. Zoller, A. Hann
         “Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images“
         In: Sci. Rep. 7, 892, 2017. (Link)
       
131.  04/17      A. Hann, L. Bettac, M. Hänle, T. Gräter, D. Schmalstieg, W. G. Zoller, J. Egger
         “Evaluation of an Interactive Segmentation Algorithm using Ultrasound Images of Pancreatic Cancer Liver Metastases“
         In: J Gastrointestin Liver Dis., Supplement 2, Pages 31-32, Mar. 2017.
       
130.  04/17      A. Hann, D. Schmalstieg, X. Chen, W. G. Zoller, J. Egger
         “Development of a Semiautomatic Segmentation Algorithm for the Measurement of Pancreatic Cancer Liver Metastases in Ultrasound Images“
         In: J Gastrointestin Liver Dis., Supplement 2, Pages 31, Mar. 2017.
       
129.  03/17      J. Egger, M. Gall, J. Wallner, P. Boechat, A. Hann, X. Li, X. Chen, D. Schmalstieg
         “HTC Vive MeVisLab integration via OpenVR for medical applications“
         In: PLoS ONE 12(3): e0173972, Mar. 2017. (Link) (pdf)
       
128.  03/17      J. Egger, M. Gall, A. Tax, M. Ücal, U. Zefferer, X. Li, G. von Campe, U. Schäfer, D. Schmalstieg, X. Chen
         “Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software“
         In: PLoS ONE, 12(3): e0172694, Mar. 2017. (Link)
       
127.  03/17      J. Egger, M. Gall, J. Wallner, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg
         “Interaktive Planung von Gesichtsimplantaten“
         In: Bildverarbeitung für die Medizin (BVM), Springer, pp. 134-139, Mar. 2017.
       
126.  02/17      J. Egger, M. Gall, J. Wallner, P. Boechat, A. Hann, X. Li, X. Chen, D. Schmalstieg
         “Integration of the HTC Vive into the Medical Platform MeVisLab“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10138-41, Orlando, FL, USA, Feb. 2017.
       
125.  02/17      M. Gall, K. Reinbacher, J. Wallner, J. Stanzel, X. Chen, K. Schwenzer-Zimmerer, D. Schmalstieg, J. Egger
         “Interactive Planning of Miniplates“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10135-93, Orlando, FL, USA, Feb. 2017.
       
124.  02/17      J. Egger, K. Hochegger, M. Gall, X. Chen, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg, J. Wallner
         “Algorithmic evaluation of lower jawbone segmentations“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 10137-11, Orlando, FL, USA, Feb. 2017.
       
123.  01/17      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer“
         In: Sci. Rep. 7, 41549, 2017. (Link)
       
122.  12/16      J. Egger
         “Segmentation of medical data and image-guided intraoperative navigation“ (in German)
         Habilitation in Computer Science (Dr. rer. nat. habil.), Philipps-University of Marburg, Department of Mathematics and Computer Science, 304 pages, 2016. (Link) (pdf)
       
121.  12/16      X. Chen, X. Li, L. Xu, Y. Sun, C. Politis, J. Egger
         “Development of a computer-aided design software for dental splint in orthognathic surgery“
         In: Sci. Rep. 6, 38867, 2016. (Link)
       
120.  11/16      J. Egger, M. Gall, D. Schmalstieg
         “Translational Research (TR) Applications in Biomedical Engineering“
         In: 1st Field of Expertise (FoE) Day Human & Biotechnology, Lecture Hall, Petersgasse 12, TU Graz, Austria, November 2016.
       
119.  10/16      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Improvement in advanced pancreatic cancer survival with novel chemotherapeutic strategies – experience of a community based hospital“
         In: Z Gastroenterol 54(10), 1138-1142, October 2016.
       
118.  10/16      J. Egger, M. Gall, J. Wallner, Z. Deng, P. Boechat de Almeida Germano, A. Hann, X. Li, X. Chen, K. Reinbacher, K. C. Schwenzer-Zimmerer, D. Schmalstieg
         “Virtual Reality in the Medical Domain“
         In: face 2 face - science meets art, Medical University of Graz, Hörsaalzentrum, Austria, September/October 2016.
       
117.  08/16      M. Gall, X. Li, X. Chen, D. Schmalstieg, J. Egger
         “Computer-Aided Planning and Reconstruction of Cranial 3D Implants“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
116.  08/16      M. Gall, J. Wallner, K. Schwenzer-Zimmerer, D. Schmalstieg, K. Reinbacher, J. Egger
         “Computer-aided Reconstruction of Facial Defects“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
115.  08/16      J. Egger, J. Wallner, K. Hochegger, M. Gall, K. Reinbacher, K. Schwenzer-Zimmerer, D. Schmalstieg
         “Clinical Evaluation of Mandibular Bone Segmentation“
         In: IEEE EMBC, Orlando, Florida, August 2016.
       
114.  06/16      M. Gall, X. Li, X. Chen, D. Schmalstieg, J. Egger
         “Computer-Aided Planning of Cranial 3D Implants“
         In: Int J CARS 11 (Suppl 1):S241, Heidelberg, Germany, June 2016.
       
113.  06/16      X. Li, L. Xu, Y. Zhu, J. Egger, X. Chen
         “A semi-automatic implant design method for cranial defect restoration“
         In: Int J CARS 11 (Suppl 1):S241-S243, Heidelberg, Germany, June 2016.
       
112.  06/16      T. Lüddemann, J. Egger
         “Iterative-cuts: longitudinal and scale-invariant segmentation via user-defined templates for rectosigmoid colon in gynecological brachytherapy“
         In: J. Med. Imag. 3(2), 024004 (2016), doi: 10.1117/1.JMI.3.2.024004, June 2016.
       
111.  03/16      T. Lüddemann, J. Egger
         “Interactive and scale invariant segmentation of the rectum/sigmoid via user-defined templates“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9784-113, San Diego, USA, Mar. 2016. (pdf)
       
110.  03/16      J. Egger, C. Nimsky
         “Cellular automata segmentation of the boundary between the compacta of vertebral bodies and surrounding structures“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9787-52, San Diego, USA, Mar. 2016. (pdf)
       
109.  02/16      J. Egger, P. Voglreiter, M. Dokter, M. Hofmann, X. Chen, W. G. Zoller, D. Schmalstieg, A. Hann
         “US-Cut: interactive algorithm for rapid detection and segmentation of liver tumors in ultrasound acquisitions“
         In: Proceedings of SPIE Medical Imaging Conference, Paper 9790-47, San Diego, USA, Feb. 2016. (pdf)
       
108.  02/16      X. Chen, L. Xu, Y. Yang, J. Egger
         “A semi-automatic computer-aided method for surgical template design“
         In: Sci. Rep. 6, 20280, 2016. (Link)
       
107.  01/16      K. E. Reinbacher, J. Wallner, J. Egger, P. Voglreiter, M. Pau, T. Zrnc, M. Feichtinger, K. Schwenzer-Zimmerer
         “AR (augmented reality)-Paradigmenwechsel im Therapiedesign“
         In: 20. Jahreskongress der Österreichischen Gesellschaft für Mund-, Kiefer- und Gesichtschirurgie (ÖGMKG), Kur- und Kongresszentrum, Bad Hofgastein, Salzburg, Jänner 2016.
       
106.  01/16      J. Wallner, K. Reinbacher, J. Egger, M. Pau, W. Zemann, T. Zrnc, D. Schmalstieg, K. Schwenzer-Zimmerer
         “Image-guided real-time-segmentation of the mandibular bone: Can a simple Segmentation approach provide a satisfying result for a practicable use?“
         In: 20. Jahreskongress der Österreichischen Gesellschaft für Mund-, Kiefer- und Gesichtschirurgie (ÖGMKG), Kur- und Kongresszentrum, Bad Hofgastein, Salzburg, Jänner 2016.
       
105.  12/15      J. Egger, P. Voglreiter, M. Dokter, M. Hofmann, H. F. Busse, D. Seider, P. Brandmaier, R. Rautio, G. Zettel, B. Schmerböck, M. van Amerongen, S. Jenniskens, M. Kolesnik, B. Kainz, R. B. Sequeiros, H. Portugaller, P. Stiegler, J. Futterer, D. Schmalstieg, M. Moche
         “In-depth Multicenter Workflow Analysis of Liver Tumor Ablations for the Development of a Novel Computer-aided Software Tool“
         In: 101th Annual Meeting of The Radiological Society of North America (RSNA), December 2015.
       
104.  10/15      J. Egger, H. Busse, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, P. Voglreiter, M. Dokter, M. Hofmann, B. Kainz, A. Hann, X. Chen, T. Alhonnoro, M. Pollari, D. Schmalstieg, M. Moche
         “Interactive Volumetry of Liver Ablation Zones“
         In: Sci. Rep. 5, 15373, 2015. (Link)
       
103.  10/15      P. Voglreiter, J. Wallner, K. Reinbacher, K. C. Schwenzer-Zimmerer, D. Schmalstieg, J. Egger
         “Global Illumination Rendering for High-Quality Volume Visualization in the Medical Domain“
         In: face 2 face - science meets art, Medical University of Graz, Hörsaalzentrum, Austria, October 2015.
       
102.  08/15      J. Egger, H. Busse, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, P. Voglreiter, M. Dokter, M. Hofmann, B. Kainz, X. Chen, A. Hann, P. Boechat, W. Yu, B. Freisleben, T. Alhonnoro, M. Pollari, M. Moche, D. Schmalstieg
         “RFA-Cut: Semi-automatic Segmentation of Radiofrequency Ablation Zones with and without Needles via Optimal s-t-Cuts“
         In: 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Milan, Italy, IEEE Press, pp. 2423-2429, Aug. 2015. 
       
101.  04/15      B. Kainz, C. Malamateniou, G. Ferrazzi, M. Murgasova, J. Egger, K. Keraudren, M. Rutherford, J. V. Hajnal, D. Rueckert
         “Adaptive Scan Strategies for fetal MRI Imaging using Slice to Volume Techniques“
         In: Proceedings of The IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, IEEE Press, Brooklyn, NY, United States, April 2015. 
       
100.  04/15      X. Chen, L. Xu, Y. Wang, H. Wang, F. Wang, X. Zeng, Q. Wang, J. Egger
         “Development of a Surgical Navigation System based on Augmented Reality using an Optical see-through Head-mounted Display“
         In: Journal of Biomedical Informatics (JBI), 55:124-31, April 2015. 
       
99.  03/15      J. Egger, H. Busse, M. Moche, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, N. Garnov, J. Fuchs, P. Voigt, F. Dazinger, P. Voglreiter, M. Dokter, M. Hofmann, A. Hann, B. Freisleben, T. Kahn, D. Schmalstieg
         “[Semi-automatic Segmentation of Ablation zones in post-interventional CT Data]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, Lübeck, Germany, pp. 281-286, March 2015. (pdf)
       
98.  03/15      T. Lüddemann, J. Egger
         “[Interactive and Scale Invariant Segmentation of the Rectum/Sigmoid in intraoperative MRI Acquisitions for the gynecological brachytherapy]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, Lübeck, Germany, March 2015. (pdf)
       
97.  12/14      H. F. Busse, M. Moche, P. Brandmaier, M. Gawlitza, S. Strocka, T. K. Kahn, D. Schmalstieg, J. Egger
         “Novel Semiautomatic Real-time CT Segmentation Tool and Preliminary Clinical Evaluation on Thermally Induced Lesions in the Liver“
         In: 100th Annual Meeting of The Radiological Society of North America (RSNA), PHS 171, December 2014. (Link) (pdf)
       
96.  06/14      J. Egger
         “Refinement-Cut: User-Guided Segmentation Algorithm for Translational Science“
         In: Sci. Rep. 4, 5164, June 2014. (Link)
       
95.  04/14      R. Schwarzenberg, B. Freisleben, C. Nimsky, J. Egger
         “Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences“
         In: PLoS One, April 2014. (Link)
       
94.  03/14      X. Chen, J. Egger
         “Development of an Open Source Software Module for Enhanced Visualization during MR-Guided Interstitial Gynecologic Brachytherapy“
         In: SpringerPlus, 3:167, March 2014. (Link) (pdf)
       
93.  03/14      J. Egger
         “[Semi-automatic Real-time Contouring with a Template-based and Scale-invariant Approach]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Springer Press, pp. 366-371, Aachen, Germany, March 2014. (pdf)
       
92.  03/14      D. Zukic, A. Vlasak, J. Egger, D. Horinek, C. Nimsky, A. Kolb
         “Robust Detection and Segmentation for Diagnosis of Vertebral Diseases using Routine MR Images“
         In: Computer Graphics Forum, Article first published online: 4 March 2014.
       
91.  02/14      J. Egger, T. Lüddemann, R. Schwarzenberg, B. Freisleben, C. Nimsky
         “Interactive-Cut: Real-Time Feedback Segmentation for Translational Research“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, Available online 11 February 2014.
       
90.  01/14      T. Kapur, J. Egger, J. Jayender, M. Toews, W. M. Wells
         “Registration and Segmentation for Image Guided Therapy. Book chapter, Intraoperative Imaging and Image-Guided Therapy“
         In: Intraoperative Imaging and Image-Guided Therapy, Ferenc A. Jolesz (Ed.), Springer, pp. 79-91, ISBN: 978-1-4614-7656-6 (Print) 978-1-4614-7657-3 (Online), January 2014.
       
89.  10/13      J. Egger
         “PCG-Cut: Graph Driven Segmentation of the Prostate Central Gland“
         In: PLoS One. 2013; 8(10):e76645. Epub 2013 Oct 11. (Link)
       
88.  09/13      J. Egger, C. Kappus, B. Carl, C. Nimsky
         “GrowCut-Based Vertebral Body Segmentation with 3D Slicer“
         In: Jahrestagung der Sektion Wirbelsäule der Deutschen Gesellschaft für Neurochirurgie (DGNC), Frankfurt am Main, Germany, Poster 24, September 2013
       
87.  08/13      J. Egger
         “Image-guided therapy system for interstitial gynecologic brachytherapy in a multimodality operating suite“
         In: SpringerPlus, 2:395, 2013. (Link)
       
86.  07/13      D. Röttger, J. Egger
         “GPU-Based Isosurface Calculation for Real-time Ablation Zone Navigation“
         In: Research Disclosure, ID 591066, Published in the Research Disclosure Journal 7/13, Published digitally 20 June, 2013
       
85.  06/13      T. Lüddemann, J. Egger
         “Rectum Segmentation in MR-guided Gynecologic Brachytherapy Data“
         In: Proceedings of The British Gynaecological Cancer Society Annual Scientific Meeting in conjunction with the Irish Gynaecological Cancer Society, The Waterfront, Belfast, Northern Ireland, Abstract topic: Cervix, PO97, pp. 162-163, June 2013. (pdf)
       
84.  03/13      G. Pernelle, J. Egger, C. Vale, X. Chen, F. Irlinger, T. Lueth, W. Wells, R. Kikinis, A. Viswanathan, T. Kapur
         “Robust Applicator Registration for Interstitial Gynecologic Brachytherapy“
         In: Brachytherapy, Volume 12, Supplement 1, Page S53, March 2013. (Link)
       
83.  03/13      J. Egger, T. Kapur, B. Freisleben, C. Nimsky
         “Interactive Real-Time Segmentation for Vertebral Bodies and Intervertebral Discs in Sagittal Planes“
         In: 6th NCIGT and NIH Image Guided Therapy Workshop, page 56, Doubletree by Hilton Washington DC in Crystal City, VA, March 2013
       
82.  03/13      J. Egger
         “Intraoperative Visualization of Multimodal Data in Neurosurgery“ (in German)
         In: Annual report 2012/2013, GFFT, p. 35, Saarbrücken, Mar. 2013.
       
81.  03/13      J. Egger, T. Kapur, A. Fedorov, S. Pieper, J. V. Miller, H. Veeraraghavan, B. Freisleben, A. J. Golby, C. Nimsky, R. Kikinis
         “GBM Volumetry using the 3D Slicer Medical Image Computing Platform“
         In: Sci. Rep., Nature Publishing Group (NPG), 3:1364, 2013. (Link)
       
80.  03/13      R. Schwarzenberg, B. Freisleben, R. Kikinis, C. Nimsky, J. Egger
         “[A Cube-Based Approach to Segment Vertebrae in MRI-Acquisitions]“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, pp. 69-74, Heidelberg, Germany, Mar. 2013.
       
79.  01/13      J. Egger, T. Kapur
         “Interactive Technique for Image Segmentation”
         Research Disclosure, ID 585025, Published in the Research Disclosure Journal 1/13, Published digitally 13 December, 2012.
       
78.  01/13      D. Kuhnt, M. H. A. Bauer, J. Egger, D. Merhof, M. Richter, T. Kapur, J. Sommer, C. Nimsky
         “Fiber tractography based on diffusion tensor imaging (DTI) compared with High Angular Resolution Diffusion Imaging (HARDI) with compressed sensing (CS) – initial experience and clinical impact“
         In: Neurosurgery, 72 Suppl 1:165-75, 2013.
       
77.  12/12      J. Egger, D. Zukic, B. Freisleben, A. Kolb, C. Nimsky
         “Segmentation of pituitary adenoma: A graph-based method vs. a balloon inflation method“
         In: Computer Methods and Programs in Biomedicine, Elsevier, 2012
       
76.  12/12      J. Egger, T. Kapur, C. Nimsky, R. Kikinis
         “Pituitary Adenoma Volumetry with 3D Slicer“
         In: PLoS ONE, 2012. (Link)
       
75.  11/12      D. Zukic, A. Vlasak, T. Dukatz, J. Egger, D. Horinek, C. Nimsky, A. Kolb
         “Segmentation of Vertebral Bodies in MR Images“
         In: Vision, Modeling, and Visualization (VMV), The Eurographics Association, pp. 135-142, Nov. 2012.
       
74.  09/12      X. Chen, J. Egger, A. Viswanathan, N. Agrawal, W. Wells, R. Kikinis, C. Tempany, F. Jolesz, T. Kapur
         “Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO“
         In: 9th Interventional MRI Symposium, Boston, Sep. 2012.
       
73.  09/12      J. Egger, T. Kapur, P. Bruners, T. Penzkofer
         “A Software Prototype for Real-time Ablation Zone Planning Using Distance Transformation Calculated Isosurfaces“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
72.  09/12      Y. Gao, N. Farhat, N. Agrawal, G. Pernelle, X. Chen, J. Egger, S. Blevins, S. Bouix, A. Tannenbaum, W. Wells, R. Kikinis, E. Schmidt, A. Viswanathan, T. Kapur
         “Needle Labeling for Interstitial Gynecological Brachytherapy“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
71.  09/12      J. Egger, N. Agrawal, T. Blevins, N. Farhat, G. Pernelle, X. Chen, Y. Gao, W. Wells, T. Penzkofer, T. Kapur, A. Viswanathan
         “Segmentation of Pelvic Structures for Gynecologic Brachytherapy“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
70.  09/12      R. Schwarzenberg, T. Kapur, W. Wells, C. Nimsky, B. Freisleben, J. Egger
         “Graph-Based Vertebra Segmentation Using a Cubic Template“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
69.  09/12      J. Egger, T. Penzkofer, T. Kapur, C. Tempany
         “Prostate Central Gland Segmentation Using a Spherical Template Driven Graph Approach“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
68.  09/12      J. Egger, T. Kapur, A. Fedorov, S. Pieper, J. V. Miller, H. Veeraraghavan, B. Freisleben, A. J. Golby, C. Nimsky, R. Kikinis
         “Capability of the Medical Image Computing Platform 3D Slicer for Glioblastoma Multiforme Segmentation in Magnetic Resonance Imaging (MRI) Data“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
67.  09/12      J. Egger, T. Kapur, C. Nimsky, R. Kikinis
         “Pituitary Adenoma Segmentation Using the Medical Image Computing Platform 3D Slicer“
         In: 5th NCIGT and NIH Image Guided Therapy Workshop, Boston, Sep. 2012
       
66.  08/12      T. Kapur, J. Egger, A. Damato, E.J. Schmidt, A.N. Viswanathan
         “3-T MR-guided brachytherapy for gynecologic malignancies“
         In: Magnetic Resonance Imaging, Elsevier, 12 pages, 2012.
       
65.  06/12      J. Egger
         “Intraoperative Visualization of Multimodal Data in Neurosurgery“ (in German)
         Dissertation in Human Biology (Dr. rer. physiol.), Philipps-University of Marburg, Department of Medicine, 223 pages, 2012. 
       
64.  06/12      C. Kappus, J. Egger, B. Carl, M.H.A. Bauer, C. Nimsky
         “Investigation of an image-based tool for planning safe trajectories in deep-brain-stimulation“
         In: 63. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), Leipzig, Jun. 2012.
       
63.  05/12      J. Egger, B. Freisleben, C. Nimsky, T. Kapur
         “Template-Cut: A Pattern-Based Segmentation Paradigm“
         In: Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012. (Link)
       
62.  05/12      J. Egger, T. Kapur, A.N. Viswanathan
         “Medical System for Gynecologic Radiation Therapy”
         Research Disclosure, ID 577033, Published in the Research Disclosure Journal 5/12, Published digitally 16 April, 2012.
       
61.  05/12      J. Egger, X. Chen, T. Kapur, A. Viswanathan
         “A novel computer program to support MR-guided gynecologic brachytherapy“
         In: World Congress of Brachytherapy, Barcelona, Spain, May 2012.
       
60.  03/12      J. Egger, T. Dukatz, B. Freisleben, Ch. Nimsky
         “Ein semiautomatischer Ansatz zur Flächenbestimmung von Wirbeln in MRT-Aufnahmen“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, Berlin, Germany, Mar. 2012, accepted.
       
59.  02/12      J. Egger, J. Tokuda, L. Chauvin, B. Freisleben, C. Nimsky, T. Kapur, W. Wells III
         “Integration of the OpenIGTLink Network Protocol for Image-Guided Therapy with the Medical Platform MeVisLab“
         In: International Journal of Medical Robotics and Computer Assisted Surgery, Wiley-Blackwell, 2012.
       
58.  02/12      J. Egger, T. Kapur, T. Dukatz, M. Kolodziej, D. Zukic, B. Freisleben, C. Nimsky
         “Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape“
         In: PLoS ONE, 2012. (Link)
       
57.  01/12      J. Egger, S. Grosskopf, C. Nimsky, T. Kapur, B. Freisleben
         “Modeling and Visualization Techniques for Virtual Stenting of Aneurysms and Stenoses“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, 2012.
       
56.  10/11      J. Egger, A. Viswanathan, T. Kapur
         “Bladder Segmentation for Interstitial Gynecologic Brachytherapy with the Nugget-Cut Approach“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
55.  10/11      R. Tibrewal, A. Viswanathan, K. Townamchai, J. Fairhurst, M. Baust, J. Egger, A. Damato, S.-E. Song, S. Pieper, C. Tempany, W. M. Wells, T. Kapur
         “Concept Development and Feasibility Study of Image-based Needle Guidance for MR-Guided Interstitial Gynecologic Brachytherapy in AMIGO“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
54.  10/11      J. Egger, B. Freisleben, R. Tibrewal, Ch. Nimsky, T. Kapur
         “A Method for Solving the Correspondence Problem for an n-Camera Navigation System for Image Guided Therapy“
         In: 4th NCIGT and NIH Image Guided Therapy Workshop, Arlington, Virginia, USA, Oct. 2011.
       
53.  08/11      J. Egger, R. Colen, B. Freisleben, Ch. Nimsky
         “Manual Refinement System for Graph-Based Segmentation Results in the Medical Domain“
         In: Journal of Medical Systems, Springer, Aug. 2011.
       
52.  03/11      J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky
         “A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data“
         In: Journal of Medical Systems, Springer, Mar. 2011.
       
51.  03/11      J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky
         “Ein effizienter geometrischer Ansatz zur Unterstützung der Trajektoriebestimmung bei der Tiefenhirnstimulation“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM) – Algorithmen - Systeme - Anwendungen, Springer Verlag, Lübeck, Germany, Mar. 2011.
       
50.  02/11      R. D. Renapurkar, R. M. Setser, T. P. O’Donnell, J. Egger, M. L. Lieber, M. Y. Desai, A. E. Stillman, P. Schoenhagen, S. D. Flamm
         “Aortic volume as an indicator of disease progression in patients with untreated infrarenal abdominal aneurysm“
         In: European Journal of Radiology, 81(2):e87-93, Epub Feb. 2011.
       
49.  02/11      Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “Preoperative Volume Determination for Pituitary Adenoma“
         In: Proceedings of SPIE Medical Imaging Conference, Orlando, Florida, USA, Feb. 2011.
       
48.  12/10      J. Egger, D. Kuhnt, C. Kappus, A. Pagenstecher, Ch. Nimsky
         “Untersuchung des Stoffwechsels im Randbereich hirneigener Tumore mit Hilfe der MRS“
         Genehmigter Ethikantrag, Philipps-Universität Marburg, Fachbereich Medizin, Seiten 1–25, Dez. 2010.
       
47.  11/10      M.H.A. Bauer, S. Barbieri, J. Egger, D. Kuhnt, J. Klein, H.K. Hahn, B. Freisleben, Ch. Nimsky
         “Segmentierung von Faserbahnsystemen mit einem strahlenbasierten Ansatz und Glättung der FA- und Winkel-Karten“
         In: Proceedings of 9. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), MEDICA, Düsseldorf, Germany, Nov. 2010.
       
46.  11/10      J. Egger, Dz. Zukic, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “A Comparison of Two Human Brain Tumor Segmentation Methods for MRI Data“
         In: Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
       
45.  11/10      Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky
         “Glioblastoma Multiforme Segmentation in MRI Data with a Balloon Inflation Approach“
         In: Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
       
44.  10/10      J. Egger, S.K. Zhou, S. Grosskopf, D. Liu, C. Hopfgartner, D. Bernhardt, C. Biermann, Ch. Nimsky, B. Freisleben
         “Body Landmark Detection for a Fully Automatic AAA Stent Graft Planning Software System“
         In: 23rd IEEE International Symposium on Computer-Based Medical Systems, IEEE Press, ACM, Perth, Australia, Oct. 2010.
       
43.  10/10      J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky
         “Evaluation of a Novel Approach for Automatic Volume Determination of Glioblastomas Based on Several Manual Expert Segmentations“
         In: Proceedings of 44. Jahrestagung der DGBMT, Rostock, Germany, Oct. 2010.
       
42.  10/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, J. Klein, H. K. Hahn, B. Freisleben, Ch. Nimsky
         “A Semi-Automatic Graph-Based Approach for Determining the Boundary of Eloquent Fiber Bundles in the Human Brain“
         In: Proceedings of 44. Jahrestagung der DGBMT, Rostock, Germany, Oct. 2010.
       
41.  09/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Freisleben, Ch. Nimsky
         “Min-Cut-Segmentation of WHO Grade IV Gliomas Evaluated against Manual Segmentation“
         In: XIX Congress of the European Society for Stereotactic and Functional Neurosurgery, Athens, Greece, Sep. 2010.
       
40.  09/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Carl, C. Kappus, B. Freisleben, Ch. Nimsky
         “Nugget-Cut: A Segmentation Scheme for Spherically- and Elliptically-Shaped 3D Objects“
         In: 32nd Annual Symposium of the German Association for Pattern Recognition (DAGM), LNCS 6376, pp. 383–392, Springer Press, Darmstadt, Germany, Sep. 2010.
       
39.  09/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, B. Freisleben, Ch. Nimsky
         “Evaluation of Several Cost Functions for Min-Cut-Segmentation of Tubular Fiber Bundles in the Human Brain“
         In: 61. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), Mannheim, Sep. 2010.
       
38.  08/10      J. Klein, S. Barbieri, H. Stuke, M. H. A. Bauer, J. Egger, Ch. Nimsky, H. K. Hahn
         “On the Reliability of Diffusion Neuroimaging“
         In: Neuroimaging, published by Sciyo, pages 1-24, ISBN 978-953-307-127-5, 2010.
       
37.  08/10      M. H. A. Bauer, J. Egger, T. O’Donnell, B. Freisleben, S. Barbieri, J. Klein, H. K. Hahn, Ch. Nimsky
         “A Fast and Robust Graph-based Approach for Boundary Estimation of Fiber Bundles Relying on Fractional Anisotropy Maps“
         In: 20th International Conference on Pattern Recognition (ICPR), Istanbul, Turkey, IEEE Computer Society, Aug. 2010.
       
36.  07/10      J. Egger, M. H. A. Bauer, D. Kuhnt, B. Freisleben, Ch. Nimsky
         “Pituitary Adenoma Segmentation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
35.  07/10      J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky
         “A Flexible Semi-Automatic Approach for Glioblastoma multiforme Segmentation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
34.  07/10      M. H. A. Bauer, J. Egger, D. Kuhnt, S. Barbieri, J. Klein, H. K. Hahn, B. Freisleben, Ch. Nimsky
         “Ray-Based and Graph-Based Methods for Fiber Bundle Boundary Estimation“
         In: Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
       
33.  06/10      M. H. A. Bauer, S. Barbieri, J. Klein, J. Egger, D. Kuhnt, B. Freisleben, H. K. Hahn, Ch. Nimsky
         “Boundary Estimation of Fiber Bundles derived from Diffusion Tensor Images“
         In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), 6(1):1-11, Epub Jun. 2010.
       
32.  06/10      J. Egger, M. H. A. Bauer, B. Freisleben, Ch. Nimsky
         “Determination, Calculation and Representation of the Upper and Lower Sealing Zones During Virtual Stenting of Aneurysms“
         In: Proceedings of Computer Assisted Radiology and Surgery (CARS 2010), Geneva, Switzerland, Jun. 2010.
       
31.  06/10      M. H. A. Bauer, S. Barbieri, J. Klein, J. Egger, D. Kuhnt, B. Freisleben, H. K. Hahn, Ch. Nimsky
         “A Ray-based Approach for Boundary Estimation of Fiber Bundles derived from Diffusion Tensor Imaging“
         In: Proceedings of Computer Assisted Radiology and Surgery (CARS 2010), Geneva, Switzerland, Jun. 2010.
       
30.  03/10      J. Egger, S. Großkopf, C. Biermann
         “Vollautomatisches Verfahren zur patientenindividuellen Berechnung und Darstellung der Versiegelungszonen beim virtuellen Stenting von Aneurysmen und Stenosen“
         Technical Disclosure, Siemens AG, IPCOM #000194159D, 2010.
       
29.  03/10      J. Egger
         “Pre- and Postoperative Segmentation and Virtual Stenting of Aneurysms and Stenosis“ (in German)
         In: Annual report 2009/2010, GFFT, pp. 25-26, Frankfurt, Mar. 2010.
       
28.  12/09      J. Egger, S. Großkopf, C. Biermann, D. Bernhardt
         “Vollautomatisches Verfahren zur patientenindividuellen Planung und Simulation von Prothesen fuer die endovaskulaere Behandlung von Gefaesserkrankungen“
         Technical Disclosure, Siemens AG, IPCOM #000189498D, 2009.
       
27.  12/09      J. Egger, B. Freisleben, S. Großkopf, C. Leber
         “Method and simulation device for structurally individualized simulation of the introduction of a wall support element into a section of a tubular structure“
         United States Patent Application: 20090304245
       
26.  11/09      J. Egger, S. Großkopf
         “Verfahren zur medizinischen Bilddarstellung“
         Patent (Veröffentlichungsnr.): DE 102006058908 B4 (DPMA).
       
25.  10/09      J. Egger, C. Biermann, S. Großkopf, C. Hopfgartner, D. Fritz, B. Freisleben
         “Vollautomatische Stent-Planung und Stent-Simulation zur Unterstützung der minimal-invasiven Behandlung von abdominalen Bauchaortenaneurysmen“
         In: 39. Jahrestagung der Gesellschaft für Informatik, Lübeck, Lecture Notes in Informatics (LNI), pp. 1317-1327, Oct. 2009.
       
24.  09/09      J. Egger, B. Freisleben, R. Setser, R. Renapuraar, C. Biermann, T. O’Donnell
         “Aorta Segmentation for Stent Simulation“
         In: 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Cardiovascular Interventional Imaging and Biophysical Modelling Workshop, 10 pages, London, UK, Sep. 2009.
       
23.  08/09      J. Egger, S. Großkopf, T. O’Donnell, B. Freisleben
         “A Software System for Stent Planning, Stent Simulation and Follow-Up Examinations in the Vascular Domain“
         In: 22nd IEEE International Symposium on Computer-Based Medical Systems, Albuquerque, New Mexico, USA, IEEE Press, ACM/SIGAPP, pp. 1-7, Aug. 2009.
       
22.  07/09      J. Egger
         “Prä- und postoperative Segmentierung und virtuelles Stenting von Aneurysmen und Stenosen“
         Dissertation, Philipps-Universität Marburg, 2009.
       
21.  04/09      S. Großkopf, J. Egger, J. Lu
         “Verfahren zur Verarbeitung medizintechnischer Bilddaten“
         Veröffentlichungsnr.: DE 102007045268 A1 (DPMA)
       
20.  02/09      J. Egger, S. Großkopf
         “Berechnungsverfahren zur Detektierung von Kollisionen mittels eines Drahtgittermodells repräsentierter räumlicher Objekte sowie Vorrichtung zur Dimensionierung medizinischer Y-Stents“
         Veröffentlichungsnr.: DE 102007039207 A1 (DPMA)
       
19.  01/09      S. Großkopf, J. Egger
         “Vorrichtung und Verfahren zur automatischen Wegplanung“
         Veröffentlichungsnr.: DE 102007028065 A1 (DPMA)
       
18.  11/08      J. Egger, T. O’Donnell, C. Hopfgartner, B. Freisleben
         “Graph-Based Tracking Method for Aortic Thrombus Segmentation“
         In: Proceedings of 4th European Congress for Medical and Biomedical Engineering, Engineering for Health, Antwerp, Belgium, Springer, pp. 584-587, Nov. 2008.
       
17.  11/08      J. Egger, S. Großkopf, B. Freisleben
         “Virtual Stenting for Carotid Stenosis with Elastic Artery Wall Modeling“
         In: Proceedings of 4th European Congress for Medical and Biomedical Engineering, Engineering for Health, Antwerp, Belgium, Springer, pp. 2499-2502, Nov. 2008.
       
16.  07/08      C. Dold, S. Großkopf, C. Biermann, J. Egger
         “Interaktives System zur Planung einer patienten-individuellen endovaskulaeren Prothese anhand von CT-Bilddaten“
         Technical Disclosure, Siemens AG, IPCOM #000172003D, 2008.
       
15.  04/08      K. Greiner, J. Egger, S. Großkopf, J. N. Kaftan, R. Dörner, B. Freisleben
         “Segmentierung von Aortenaneurysmen in CTA-Bildern mit dem statistischen Verfahren der Active Appearance Models“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Berlin, Germany, Springer-Verlag, pp. 51-55, Apr. 2008.
       
14.  04/08      J. Egger, S. Großkopf
         “Verfahren sowie Vorrichtung zur medizinischen Bilddarstellung“
         Veröffentlichungsnr.: DE 102006058908 A1 (DPMA)
       
13.  02/08      J. Lu, J. Egger, A. Wimmer, S. Großkopf, B. Freisleben
         “Detection and Visualization of Endoleaks in CT Data for Monitoring of Thoracic and Abdominal Aortic Aneurysm Stents“
         In: Proceedings of SPIE Medical Imaging Conference, Vol. 6918, pp. 69181F(1-7), San Diego, USA, Feb. 2008.
       
12.   10/07      J. Lu, J. Egger, A. Wimmer, S. Großkopf, B. Freisleben
         “Segmentierung und Visualisierung von Lumen und Thrombus bei thorakalen Aortenaneurysmen“
         In: Proceedings of 6. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), Karlsruhe, Germany, pp. 251-254, Oct. 2007.
       
11.   08/07      J. Egger, Z. Mostarkic, F. Maier, J. N. Kaftan, S. Großkopf, B. Freisleben
         “Fast Self-Collision Detection and Simulation of Bifurcated Stents to Treat Abdominal Aortic Aneurysms (AAA)“
         In: 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Lyon, France, pp. 6231-6234, IEEE Press, Aug. 2007.
       
10.   06/07      J. Egger, Z. Mostarkic, S. Großkopf, B. Freisleben
         “A Fast Vessel Centerline Extraction Algorithm for Catheter Simulation“
         In: 20th IEEE International Symposium on Computer-Based Medical Systems, Maribor, Slovenia, pp. 177-182, IEEE Press, Jun. 2007.
       
9.   04/07      J. Egger, Z. Mostarkic, S. Großkopf, B. Freisleben
         “Preoperative Measurement of Aneurysms and Stenosis and Stent-Simulation for Endovascular Treatment“
         In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington (D.C.), USA, pp. 392-395, IEEE Press, Apr. 2007.
       
8.   03/07      J. Egger, S. Großkopf, B. Freisleben
         “Präoperative Simulation von Rohrprothesen und Y-Stents zur endovaskulären Behandlung von Stenosen und Aneurysmen“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Munich, Germany, pp. 182-186, Springer-Verlag, Mar. 2007.
       
7.   02/07      J. Egger, S. Großkopf, B. Freisleben
         “Simulation of bifurcated stent grafts to treat abdominal aortic aneurysms (AAA)“
         In: Proceedings of SPIE Medical Imaging Conference, Vol. 6509, pp. 65091N(1-6), San Diego, USA, Feb. 2007.
       
6.   10/06      J. Egger, S. Großkopf, B. Freisleben
         “Comparison of two methods for the preoperative visualization of stent grafts in CT-data“
         In: Proceedings of 5. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), Hanover, Germany, pp. 140-141, Oct. 2006.
       
5.   06/06      J. Egger
         “Selektion und Visualisierung von Endoprothesen (Stent Grafts) zur Therapieplanung von Bauchaortenaneurysmen (BAA)“
         Masterthesis, Hochschule Darmstadt, 2006.
       
4.   03/06      D. Richter, J. Egger, G. Straßmann
         “Ein Algorithmus zur Positionsbestimmung von Patienten und Biopsienadeln mit einem Vierkamerasystem“
         In: Proceedings of Bildverarbeitung für die Medizin (BVM), Hamburg, Germany, pp. 316-320, Springer-Verlag, Mar. 2006.
       
3.   06/04      D. Richter, F. La Torre, J. Egger, G. Straßmann
         “Tetraoptical Camera System for Medical Navigation“
         In: Proceedings of the 17th International EURASIP Conference BIOSIGNAL, Brno, Czech Republic, pp. 270-272, Vutium Press, Jun. 2004. (pdf)
       
2.  03/04      D. Richter, J. Egger
         “Verfahren zur dreidimensionalen Rekonstruktion von räumlichen Punktmodellen aus mehr als zwei fragmentierten Stereobildern für medizinische Anwendungen“
         Veröffentlichungsnr.: DE 102004015498 A1 (DPMA)
       
1.   02/04      J. Egger
         “Fraktionierte 3D-Erkennung von Landmarken mit einem tetraoptischen System “
         Diplomarbeit, Fachhochschule Wiesbaden, 2004.