39.  03/19      C. Gsaxner, P. Roth, J. Wallner, J. Egger
         “Exploit fully automatic low-level segmented PET Data for training high-level Deep Learning Algorithms for the corresponding CT Data“
         In: PLoS ONE 14(3): e0212550, Mar. 2019. (Link) (thesis)
38.  01/19      J. Wallner, I Mischak, J. Egger
         “Computed tomography data collection of the complete human mandible and valid clinical ground truth models“
         In: Scientific Data volume 6, Article number: 190003, 2019. (Link)
37.  05/18      J. Wallner, K. Hochegger, X. Chen, I. Mischak, K. Reinbacher, M. Pau, T. Zrnc, K. Schwenzer-Zimmerer, W. Zemann, D. Schmalstieg, J. Egger
         “Clinical evaluation of semi-automatic opensource algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action“
         In: PLoS ONE 13(5): e0196378, May 2018. (Link)
36.  05/18      S. Bruneder, J. Wallner, A. Weiglein, K. Ludmila, J. Egger, U. Pilsl, W. Zemann
         “Anatomy of the Le Fort I segment: Are arterial variations a potential risk factor for avascular bone necrosis in Le Fort I osteotomies?“
         In: Journal of Cranio-Maxillofacial Surgery, Elsevier, May 2018.
35.  03/18      A. Hann, E. Nosalski, P.C. Hermann, J. Egger, T. Seufferlein, F. Keller
         “Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: a systematic review“
         In: Clinical Nephrology - Dustri-Verlag, pp. 1-17, Mar. 2018.
34.  11/17      J. Egger, C. Nimsky, X. Chen
         “Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application“
         In: SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017. (Link) (pdf)
33.  10/17      A. Hann, L. Bettac, M. M. Haenle, T. Graeter, A. W. Berger, J. Dreyhaupt, D. Schmalstieg, W. G. Zoller, J. Egger
         “Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound“
         In: Sci. Rep. 7, 12779, 2017. (Link)
32.  08/17      J. Egger, J. Wallner, M. Gall, X. Chen, K. Schwenzer-Zimmerer, K. Reinbacher, D. Schmalstieg
         “Computer-aided position planning of miniplates to treat facial bone defects“
         In: PLoS ONE 12(8): e0182839, Aug. 2017. (Link) (thesis)
31.  06/17      X. Chen, L. Xu, X. Li, J. Egger
         “Computer-aided implant design for the restoration of cranial defects“
         In: Sci. Rep. 7, 4199, 2017. (Link)
30.  04/17      J. Egger, D. Schmalstieg, X. Chen, W. G. Zoller, A. Hann
         “Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images“
         In: Sci. Rep. 7, 892, 2017. (Link)
29.  03/17      J. Egger, M. Gall, J. Wallner, P. Boechat, A. Hann, X. Li, X. Chen, D. Schmalstieg
         “HTC Vive MeVisLab integration via OpenVR for medical applications“
         In: PLoS ONE 12(3): e0173972, Mar. 2017. (Link) (pdf)
28.  03/17      J. Egger, M. Gall, A. Tax, M. Ücal, U. Zefferer, X. Li, G. von Campe, U. Schäfer, D. Schmalstieg, X. Chen
         “Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software“
         In: PLoS ONE, 12(3): e0172694, 2017. (Link)
27.  01/17      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer“
         In: Sci. Rep. 7, 41549, 2017. (Link) (pdf)
26.  12/16      X. Chen, X. Li, L. Xu, Y. Sun, C. Politis, J. Egger
         “Development of a computer-aided design software for dental splint in orthognathic surgery“
         In: Sci. Rep. 6, 38867, 2016. (Link)
25.  10/16      A. Hann, W. Bohle, J. Egger, W. Zoller
         “Improvement in advanced pancreatic cancer survival with novel chemotherapeutic strategies – experience of a community based hospital“
         In: Z Gastroenterol 54(10), 1138-1142, October 2016.
24.  06/16      T. Lüddemann, J. Egger
         “Iterative-cuts: longitudinal and scale-invariant segmentation via user-defined templates for rectosigmoid colon in gynecological brachytherapy“
         In: J. Med. Imag. 3(2), 024004 (2016), doi: 10.1117/1.JMI.3.2.024004, June 2016. (Link) (thesis)
23.  02/16      X. Chen, L. Xu, Y. Yang, J. Egger
         “A semi-automatic computer-aided method for surgical template design“
         In: Sci. Rep. 6, 20280, 2016. (Link) (pdf)
22.  10/15      J. Egger, H. Busse, P. Brandmaier, D. Seider, M. Gawlitza, S. Strocka, P. Voglreiter, M. Dokter, M. Hofmann, B. Kainz, A. Hann, X. Chen, T. Alhonnoro, M. Pollari, D. Schmalstieg, M. Moche
         “Interactive Volumetry of Liver Ablation Zones“
         In: Sci. Rep. 5, 15373, 2015. (Link) (pdf)
21.  04/15      X. Chen, L. Xu, Y. Wang, H. Wang, F. Wang, X. Zeng, Q. Wang, J. Egger
         “Development of a Surgical Navigation System based on Augmented Reality using an Optical see-through Head-mounted Display“
         In: Journal of Biomedical Informatics (JBI), Elsevier, April 2015. 
20.  06/14      J. Egger
         “Refinement-Cut: User-Guided Segmentation Algorithm for Translational Science“
         In: Sci. Rep. 4, 5164, June 2014. (Link)
19.  04/14      R. Schwarzenberg, B. Freisleben, C. Nimsky, J. Egger
         “Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences“
         In: PLoS One, April 2014. (Link) (thesis)
18.  03/14      X. Chen, J. Egger
         “Development of an Open Source Software Module for Enhanced Visualization during MR-Guided Interstitial Gynecologic Brachytherapy“
         In: SpringerPlus, 3:167, March 2014. (Link) (pdf)
17.  03/14      D. Zukic, A. Vlasak, J. Egger, D. Horinek, C. Nimsky, A. Kolb
         “Robust Detection and Segmentation for Diagnosis of Vertebral Diseases using Routine MR Images“
         In: Computer Graphics Forum, Article first published online: 4 March 2014.
16.  02/14      J. Egger, T. Lüddemann, R. Schwarzenberg, B. Freisleben, C. Nimsky
         “Interactive-Cut: Real-Time Feedback Segmentation for Translational Research“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, Available online 11 February 2014.
15.  10/13      J. Egger
         “PCG-Cut: Graph Driven Segmentation of the Prostate Central Gland“
         In: PLoS One. 2013; 8(10):e76645. Epub 2013 Oct 11. (Link)
14.  08/13      J. Egger
         “Image-guided therapy system for interstitial gynecologic brachytherapy in a multimodality operating suite“
         In: SpringerPlus, 2:395, 2013. (Link) (pdf)
13.  03/13      J. Egger, T. Kapur, A. Fedorov, S. Pieper, J. V. Miller, H. Veeraraghavan, B. Freisleben, A. J. Golby, C. Nimsky, R. Kikinis
         “GBM Volumetry using the 3D Slicer Medical Image Computing Platform“
         In: Sci Rep., Nature Publishing Group (NPG), 3:1364, 2013. (Link)
12.  01/13      D. Kuhnt, M. H. A. Bauer, J. Egger, D. Merhof, M. Richter, T. Kapur, J. Sommer, C. Nimsky
         “Fiber tractography based on diffusion tensor imaging (DTI) compared with High Angular Resolution Diffusion Imaging (HARDI) with compressed sensing (CS) – initial experience and clinical impact“
         In: Neurosurgery, accepted, 2013.
11.  12/12      J. Egger, D. Zukic, B. Freisleben, A. Kolb, C. Nimsky
         “Segmentation of pituitary adenoma: A graph-based method vs. a balloon inflation method“
         In: Computer Methods and Programs in Biomedicine, Elsevier, 2012
10.  12/12      J. Egger, T. Kapur, C. Nimsky, R. Kikinis
         “Pituitary Adenoma Volumetry with 3D Slicer“
         In: PLoS ONE, 2012. (Link)
9.  08/12      T. Kapur, J. Egger, A. Damato, E. Schmidt, A. Viswanathan
         “3-T MR-guided brachytherapy for gynecologic malignancies“
         In: Magnetic Resonance Imaging, Elsevier, 12 pages, 2012
8.  05/12      J. Egger, B. Freisleben, C. Nimsky, T. Kapur
         “Template-Cut: A Pattern-Based Segmentation Paradigm“
         In: Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012. (Link)
7.  02/12      J. Egger, J. Tokuda, L. Chauvin, B. Freisleben, C. Nimsky, T. Kapur, W. Wells III
         “Integration of the OpenIGTLink Network Protocol for Image-Guided Therapy with the Medical Platform MeVisLab“
         In: International Journal of Medical Robotics and Computer Assisted Surgery, Wiley-Blackwell, 2012.
6.  02/12      J. Egger, T. Kapur, T. Dukatz, M. Kolodziej, D. Zukic, B. Freisleben, C. Nimsky
         “Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape“
         In: PLoS ONE, 2012. (Link)
5.  01/12      J. Egger, S. Grosskopf, C. Nimsky, T. Kapur, B. Freisleben
         “Modeling and Visualization Techniques for Virtual Stenting of Aneurysms and Stenoses“
         In: Journal of Computerized Medical Imaging and Graphics, Elsevier, 2012.
4.  08/11      J. Egger, R. Colen, B. Freisleben, Ch. Nimsky
         “Manual Refinement System for Graph-Based Segmentation Results in the Medical Domain“
         In: Journal of Medical Systems, Springer, Aug. 2011.
3.  03/11      J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky
         “A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data“
         In: Journal of Medical Systems, Springer, Mar. 2011.
2.  02/11      R. D. Renapurkar, R. M. Setser, T. P. O’Donnell, J. Egger, M. L. Lieber, M. Y. Desai, A. E. Stillman, P. Schoenhagen, S. D. Flamm
         “Aortic volume as an indicator of disease progression in patients with untreated infrarenal abdominal aneurysm“
         In: European Journal of Radiology, Elsevier, Feb. 2011.
1.  06/10      M. H. A. Bauer, S. Barbieri, J. Klein, J. Egger, D. Kuhnt, B. Freisleben, H. K. Hahn, Ch. Nimsky
         “Boundary Estimation of Fiber Bundles derived from Diffusion Tensor Images“
         In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), Springer, Jun. 2010.